Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01177 ATGGCGTCCACCTTCCGCGACCGCACCTCGGAGTTTCGATCACTGTCTCTGACTCTGAAGAAGATTGGAGGAGCACCACCACCTAATCAACCTGAAAACGCCCCATATACATCTACACAATCTAGTCCAACATCCTCGTATTCTAGATCCGAATTCAACCGGCGCGCCTCACGGATCGGGCTCGGTATCCATGAAACCTCGCAGAAGATTGCAAGGCTTACTCAATTGGCGAAGAAGTCATCAATTTTCAACGATCCCATTTTGGAAATACAAGAACTAACTGCTTTGATTAAGAATGACATCACAGCTTTGAATTCAGCTCTTTCGGATTTacaatcaattcaaaacatgGAGATGGTTGATGGAAATTATTCAGAGGATAGAATTGTTCATTCAACTGCTGTTTTTGATGACTTAAAGAGCAAACTTATGGGGGCAACGAAGCAGCTTCAAGATGTGTTAACTACGAGGACAGAGAACATCAAGGCTCATGAGAATAGGAAGCAGATATTTTCTAAGAATGCATCAAGAGAGAACCCTTTCCAGCATCAGCCAAAGCCATCGACCGAGCCACCCCCTTGGTCAAAATCATCAAATCCATCTGAAAGTTTGAATCAAACGTCAGCGTTACCGTCTAATGGAGTTCCAGTGGGCAGTCAACTAAgACGAAGGTTAGCTGTGGATAACACTCCATCTCAGCAAATGGAAATGTCTATGGTACAACAGGTTGTACCACGGCAGGAACATTACGCCCAAAGTCGGGCAACTGCTCTGCACAACGTGGAATCTACTATCACAGAACTTAGTGGGATCTTCTCGCACTTGGCCACAATGGTTGCCCAGCAAGGGGAACTAGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCaaccaaatttcatcaaatagAATTCTCGCTTCATGGCTCATTTGGATATgcctttgttttttctgtGGAGGCAGAGATGTGAAAACCGCCAAAGAATTATACACGTG 1040 0.426 MASTFRDRTSEFRSLSLTLKKIGGAPPPNQPENAPYTSTQSSPTSSYSRSEFNRRASRIGLGIHETSQKIARLTQLAKKSSIFNDPILEIQELTALIKNDITALNSALSDLQSIQNMEMVDGNYSEDRIVHSTAVFDDLKSKLMGATKQLQDVLTTRTENIKAHENRKQIFSKNASRENPFQHQPKPSTEPPPWSKSSNPSESLNQTSALPSNGVPVGSQLRRRLAVDNTPSQQMEMSMVQQVVPRQEHYAQSRATALHNVESTITELSGIFSHLATMVAQQGELAIRIDDNMDESLANVEGAHSSLLRHLNQISSNRWLMIKIFAILILFLMIFIFFVA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01177 340 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 4 20 IPR021538 -
Bva13g01177 340 MobiDBLite consensus disorder prediction 20 51 - -
Bva13g01177 340 PANTHER SYNTAXIN-31 4 339 - -
Bva13g01177 340 MobiDBLite consensus disorder prediction 34 51 - -
Bva13g01177 340 Pfam SNARE domain 285 336 IPR000727 -
Bva13g01177 340 ProSitePatterns Syntaxin / epimorphin family signature. 254 293 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bva13g01177 340 CDD SNARE_syntaxin5 251 336 - -
Bva13g01177 340 Gene3D - 46 303 - -
Bva13g01177 340 PANTHER SYNTAXIN 4 339 IPR045242 -
Bva13g01177 340 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 248 310 IPR000727 -
Bva13g01177 340 MobiDBLite consensus disorder prediction 159 218 - -
Bva13g01177 340 SUPERFAMILY t-snare proteins 48 303 IPR010989 GO:0016020|GO:0016192
Bva13g01177 340 SMART tSNARE_6 243 310 IPR000727 -
Bva13g01177 340 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01177 Bva-Chr13 5878495 5882832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01177 1 340 SNARE and Associated Proteins AT5G05760 68.328 8.27e-157 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01177 K08490 - gmx:100777383 512.686