Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01161 ATGGCGCCGAGGGACAGGGTTTCCTCCGCTAAAGCTGCCGGAAACGGTGGCGTCAAGGAGGTCCATTTTAGAGGAGTGAGAAAGAGGCCATGGGGGAGATATGCCGCTGAGATTAGAGATCCTGGGAAGAAAAGCCGTGTCTGGCTTGGAACGTTCGATACGGCTGAAGAGGCAGCTCGCGCCTACGACGCCGCGGCCAGGGAGTTTCGTGGCGCCAAGGCCAAAACTAACTTCCCTCTGCCTATTGAGAATGCGAAAACCACTTTGAACAACCAGAGCTCGAGCCAGAATAGTACGGTGGAGTCGCCCGGCCGCGAGCCGGCTCACATGGTTGAATCATCACCGTTGGACCTTAACTTCGCCGTCAACAGTACCGTCAGGTTTCCGTTCCAGCAGCAACCGCGGCAGTTTCCTCAGTTCGGTGCGGTTTTTCCTGGCGCACTGCCGGCGGCGAGCCAGAAGCTCTACTTTGACGCCATGATACGGTCCGGGATGGTGGCTGTCCATCCGTACCAACGTGTGGGGTACGATCATCGCCATCATATGCCGGAGGGTGAGTTCCAGGCAACTTCCTCCGGCGGTGGAGCCCAAAGCGACTCCGATTCATCCTCGGTGATCGATCTGAACCAGGATGTCGTTGAGCCTCGGAGGGATTTCGTTCTCGATCTTAACCACCCTCCACTGGAACTCcctta 695 0.5712 MAPRDRVSSAKAAGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLPIENAKTTLNNQSSSQNSTVESPGREPAHMVESSPLDLNFAVNSTVRFPFQQQPRQFPQFGAVFPGALPAASQKLYFDAMIRSGMVAVHPYQRVGYDHRHHMPEGEFQATSSGGGAQSDSDSSSVIDLNQDVVEPRRDFVLDLNHPPLELP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01161 231 MobiDBLite consensus disorder prediction 190 209 - -
Bva13g01161 231 MobiDBLite consensus disorder prediction 86 103 - -
Bva13g01161 231 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Bva13g01161 231 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Bva13g01161 231 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Bva13g01161 231 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Bva13g01161 231 MobiDBLite consensus disorder prediction 86 111 - -
Bva13g01161 231 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Bva13g01161 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 218 - -
Bva13g01161 231 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Bva13g01161 231 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Bva13g01161 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 218 - -
Bva13g01161 231 MobiDBLite consensus disorder prediction 184 210 - -
Bva13g01161 231 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01161 Bva-Chr13 5799304 5800383 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01161 1 227 AP2-EREBP Transcription Factor Family AT5G44210 42.449 4.46e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva13g01161 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01161 K09286 - jre:108983254 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01161 13 5799304 5800383 Bva13g01161 13 5799304 5800383 ECH
Bva14g01411 14 7038459 7039524 Bva13g01161 13 5799304 5800383 ECH
Bva09g00887 09 4573901 4574990 Bva13g01161 13 5799304 5800383 ECH
Bva07g01728 07 16072171 16073170 Bva13g01161 13 5799304 5800383 ECH
Bva09g00647 09 3371725 3372621 Bva13g01161 13 5799304 5800383 ECH
Bva07g01989 07 17380565 17381455 Bva13g01161 13 5799304 5800383 ECH