Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01159 ATGGCGTCTTCTTCGTCTTCCAACTCTCGCGAGGGACACTACCGAGGTGTACGGAAGAGGCCATGGGGTCGTTACGCTGCCGAGATACGCGATCCTTGGAAGAAAACCAGAGTTTGGTTGGGTACATTTGACACGCCGGAAGAAGCTGCGCTTGCTTACGACGGCGCCGCTCGTTCCCTCCGTGGAGCCAAGGCGAAGACTAACTTTCCTCCAGCTCCAGTTACCGGTGGCCTCTGTCTCGATCTCAACGTTCCAAACTCGGATCATCGCTGGCCTTCTGGCCGTCTTATGCTCGGTGAGTTCCTTAACACTGCTGTTCTGAATAGTAACCAGCCTTCGTCCATGATGAACGTTGCTGCTGTGCATAACAGACGCGACAACGGGATTCCCATCGGCGGTGGTTCTCATAATCACGTCCCAGAGAGTTCACATGCGGCGTCGTTTCTGGGTCTTGTTCGGCGCGGTCTTCCCATCGACTTGAACGAGCCTCCACCGCTATGGCTGTA 506 0.5553 MASSSSSNSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVTGGLCLDLNVPNSDHRWPSGRLMLGEFLNTAVLNSNQPSSMMNVAAVHNRRDNGIPIGGGSHNHVPESSHAASFLGLVRRGLPIDLNEPPPLWL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01159 168 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Bva13g01159 168 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Bva13g01159 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 8 157 - -
Bva13g01159 168 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Bva13g01159 168 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Bva13g01159 168 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 157 - -
Bva13g01159 168 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Bva13g01159 168 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Bva13g01159 168 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Bva13g01159 168 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01159 Bva-Chr13 5786311 5787068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01159 4 168 AP2-EREBP Transcription Factor Family AT1G28360 47.343 8.61e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva13g01159 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01159 - - cam:101504196 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01159 13 5786311 5787068 Bva13g01159 13 5786311 5787068 ECH