Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01157 ATGCCATCCTCAGAATCTCCGGCAACCTCCGATGGCGAAAGTGATCCATCGATCGAGGTCTATGAATCCGACGTTGATGCCAACATGTCAGAAGAACAAGATTCCAAGGAAGAAGTAGAcgtggaagaagaagaaaatgaagaagaagaggaagagggtgagggggaggaggaggaggagctAGAGCACCAAGGAGAAGAGTCAGTTTCGCCAGCGAGTGCCGAAAAGAGTCCGAAAGATTTGGGTAAACATATGGAGTTTGAGGGGCAAGACGGAAACTTGAGACTCCCTTCTTCTGTGGCAGAAAACCCTGGAGTGATGCTACCATCCAGTAGACTTactatggaaaagaaaaatgcgcAAGTCAAGGTTTCTGTTCCTTCACCGGAGATGATTCCAATGAAAAAAGGAGAATTTCACCCGAATGAGGAAATTTCAAGTGCTCCAAAATCTATCAACCAAATTAGGCAGTTGGAGATGCAATCAAGGGATGATAATAAGCAAATAGAATCAAGATTCATTGTTCCTGATACAAGTAGTAGAAGCCTATCTCCCAGTGCTGACATGAAAGATGGAAACAAACGCCAAGCaattatttgttctttctttgctaAAGGGTGGTGCATCAAGGGTGGTTCATGTAGGTTTCTTCATGTAAAGGATAATGTGAGTAATACTGGCCAGCAGGCTGAAAGAGACTTGGTTAATGCAGACCATAAGAGAGAAGTGCAACCAGAGGAAgGTTTTAGAGACAATTCTGAGAGATCACCGATTCCTGGTACTTCAGTTCCATCAACTGCTTCAATGGGGAGTACATCTTTGTATTCTTCTGAACTTTCTTCTAAACAGACTATCCAGAACAAGCAAGAAGCTTGCCAAAATAGTAGAGCTAATTCTAGGGATAGATTGTTTCCCGAGaatggattttcttttcatccatcaaaaaattatttcagcACAAATCTATCTTCCTACTCTAACCATAAGTACAGTGGATATACTTCACCATTTACGAGTCATCTACATTATGCTTGTAGATCCACGTTGTCTGGTTCAGAGTGGGAAAATTTGTCTCTAGTTAGTTCATCTGGGGTTCCCCTGCACTCCACTGGATATAGATCAAAAATCTGTTCTTATAATTGGGAGCCTTCTGTTCCTTTTCAaccatcattttttattagttctaCAAGTATGTCATCCCCTGGAGCCCAGTACACAACTCTTCATGACAAAATTGAGATACCCAACATAGGAGATGGATCCTTGAAAGCCACTATTTTAATTCAAGGGTCATCCAATCAGGCTTCATCACAGTTACGGACATATGGTGAGTCTGCTGTAGCTGGAAACCAGGTGGCGGACTTGAATGATGACAAAAGTTCTGTATCTTCCCATAAAAGATCTAATGAAAACGAGCCAATCAAGAGATGTGTTCCTCAAGAAAAAGATTGTCTTGCAAATGAAACAGAGACAACAGCAGGATCTTATCTTCACGGCCAAACTGGTAAAATGGGTATGGGGGAAAACAACTTTGGTGTTGAAGATATTACAAGAACAGAAAAAGATATTAGACTTCAAGGTGAAGGATCAGGACAGAAGACAAACAGAATTGACAGGGATAGGAAAAACAGTGATATTGAAGTTGACTCTAGGATTGGTGGCAGTGTGCAGAAAGATCCAAAGGTTCTCAAAAATTTCCGTGTGGCTCTCGTAGATTTAGTGAAAGATTTGTTAAAACCAACGTGGCATGATGGTCGTCTCAGCAAGGATGCACATATTTTGATAGTTAAAAAATCAGTCGACAAGATTCTTAGCACCTTACAGCCCCACCAGATTCCAATTACCTTGGATAATATTAACCACTTTGTCTTGGTATCTCGGCCAAAAATTGCAAAGCTTGTTGATGGTTATGTTAATAAATATGGGAAATCCTG 1934 0.3775 MPSSESPATSDGESDPSIEVYESDVDANMSEEQDSKEEVDVEEEENEEEEEEGEGEEEEELEHQGEESVSPASAEKSPKDLGKHMEFEGQDGNLRLPSSVAENPGVMLPSSRLTMEKKNAQVKVSVPSPEMIPMKKGEFHPNEEISSAPKSINQIRQLEMQSRDDNKQIESRFIVPDTSSRSLSPSADMKDGNKRQAIICSFFAKGWCIKGGSCRFLHVKDNVSNTGQQAERDLVNADHKREVQPEEGFRDNSERSPIPGTSVPSTASMGSTSLYSSELSSKQTIQNKQEACQNSRANSRDRLFPENGFSFHPSKNYFSTNLSSYSNHKYSGYTSPFTSHLHYACRSTLSGSEWENLSLVSSSGVPLHSTGYRSKICSYNWEPSVPFQPSFFISSTSMSSPGAQYTTLHDKIEIPNIGDGSLKATILIQGSSNQASSQLRTYGESAVAGNQVADLNDDKSSVSSHKRSNENEPIKRCVPQEKDCLANETETTAGSYLHGQTGKMGMGENNFGVEDITRTEKDIRLQGEGSGQKTNRIDRDRKNSDIEVDSRIGGSVQKDPKVLKNFRVALVDLVKDLLKPTWHDGRLSKDAHILIVKKSVDKILSTLQPHQIPITLDNINHFVLVSRPKIAKLVDGYVNKYGKS 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01157 644 MobiDBLite consensus disorder prediction 228 273 - -
Bva13g01157 644 SMART c3hfinal6 194 220 IPR000571 GO:0046872
Bva13g01157 644 MobiDBLite consensus disorder prediction 450 481 - -
Bva13g01157 644 Gene3D - 186 266 - -
Bva13g01157 644 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 199 219 IPR000571 GO:0046872
Bva13g01157 644 Coils Coil 32 64 - -
Bva13g01157 644 MobiDBLite consensus disorder prediction 160 191 - -
Bva13g01157 644 MobiDBLite consensus disorder prediction 459 481 - -
Bva13g01157 644 MobiDBLite consensus disorder prediction 521 542 - -
Bva13g01157 644 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 644 - -
Bva13g01157 644 MobiDBLite consensus disorder prediction 233 253 - -
Bva13g01157 644 SUPERFAMILY CCCH zinc finger 194 218 IPR036855 GO:0046872
Bva13g01157 644 MobiDBLite consensus disorder prediction 172 189 - -
Bva13g01157 644 MobiDBLite consensus disorder prediction 35 64 - -
Bva13g01157 644 MobiDBLite consensus disorder prediction 1 105 - -
Bva13g01157 644 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 644 - -
Bva13g01157 644 ProSiteProfiles Zinc finger C3H1-type profile. 194 221 IPR000571 GO:0046872
Bva13g01157 644 MobiDBLite consensus disorder prediction 255 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01157 Bva-Chr13 5771203 5776401 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva13g01157 zf-CCCH 4.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01157 - - aprc:113872594 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01157 13 5771203 5776401 Bva13g01157 13 5771203 5776401 ECH