Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01155 ATGCCAGCCCAGAAGCGCTCGCACGAGGCTGCAGAGGAGAGTGCTGTGGGAAACGAGAAGAACGACAATGAGCAACCAGAAGATGAACTGGAATCCGATCGAAGCTCTCCGTGGAACAACGGGGACAAAGAAGAATATGTTGTTATCAAATTATCAGATGTACGCAAGGAAGTTCAATGCCCCATCTGTCTTGGAATCATCCGGAAAACAAGAACTGTTATGGAATGCCTGCATCGCTTTTGCAGAGAATGCATAGACAAATCTATGCGACTTGGTAACAATGAATGCCCTGCTTGCCGCACCCACTGTGCTAGTCAACGCTCCCTAAGAGATGATCCAAACTACGATGCCTTAATTGCTGCTCTCTATCCAGATATTGACAAGTATGAGGAGGAGGAATTTGCATTACATGAGGATGAGAGGGCTCGGAATAAGCAGATTCAAGCTTCTATTGCCCAAATTCTTCGACGACAAACTGAAGCACTGAGTAAGAAGCGTAATGCCAAAGCCACGGCAGTGGCTTTTGTGAGGAAGTCACAGGGTACTTATCGAACTTCACATCCAAGGAGCAGAAGAAGAGTGGCAGTTAACATTGAAGGATTTTCTGACAGTGATGATACAAATGATAATGATGGGAGCAAGGGTCCATCTTCAGGTGATGAGCAGACAGAAACCAAGCCGAAAAGAAGCAAGAGAGGAGAAGTACAATTTTCTCAGAATGCTTCTGCCACTGGTGCAGATGGAGCTGGTGAAGAAAATGTTCCTGAAGCAAATAGAGAACTCATGGGTCCATCTGGTACACTTGCCTGGGGTAAAAATGGCCAGCGGAGTCACACCCGAGTCAATGGTAAGAATTCCAGAAACAGTCGCATCTCCAGATTGGTTGATCATCTCCGTAACTCTGATGAAACTAATGACgagTTGGGCATCCATCTCATGCTTGTCTCTTTTGATGAGCAAAGAATACCGAGTTTGCCGCAGCCCTACCTTTGCTGCAGGCCTACATTATCAGTCAGACACATACGCCAGTACATTGCGCGACAAACTGCACTGCAGGCTGATGAAGTTGAATTAAGCTTGGTAAAAGAACAGCAAGCCAACGTTATAAGAGCTGCAGGCACAGTAAATCCATGCAAAGATCAGTTGCAAGTTCTGGGAGAGCAAGAAACTTTGGCCGAACTGGAAACCGATAGTCTCAGCTGCGGCTATCTGCTCATGACATATAAGAGGAAATTGTGGAACTCAAATGAATG 1253 0.4581 MPAQKRSHEAAEESAVGNEKNDNEQPEDELESDRSSPWNNGDKEEYVVIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASQRSLRDDPNYDALIAALYPDIDKYEEEEFALHEDERARNKQIQASIAQILRRQTEALSKKRNAKATAVAFVRKSQGTYRTSHPRSRRRVAVNIEGFSDSDDTNDNDGSKGPSSGDEQTETKPKRSKRGEVQFSQNASATGADGAGEENVPEANRELMGPSGTLAWGKNGQRSHTRVNGKNSRNSRISRLVDHLRNSDETNDELGIHLMLVSFDEQRIPSLPQPYLCCRPTLSVRHIRQYIARQTALQADEVELSLVKEQQANVIRAAGTVNPCKDQLQVLGEQETLAELETDSLSCGYLLMTYKRKLWNSNE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01155 417 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Bva13g01155 417 SUPERFAMILY RING/U-box 45 131 - -
Bva13g01155 417 MobiDBLite consensus disorder prediction 181 288 - -
Bva13g01155 417 PANTHER OS11G0578200 PROTEIN 1 413 - -
Bva13g01155 417 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Bva13g01155 417 SMART ring_2 60 99 IPR001841 -
Bva13g01155 417 MobiDBLite consensus disorder prediction 1 23 - -
Bva13g01155 417 MobiDBLite consensus disorder prediction 270 288 - -
Bva13g01155 417 CDD RING-HC_RING1_like 60 100 - -
Bva13g01155 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 130 IPR013083 -
Bva13g01155 417 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Bva13g01155 417 PANTHER OS11G0578200 PROTEIN 1 413 IPR044592 -
Bva13g01155 417 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01155 Bva-Chr13 5760125 5764995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01155 53 123 C3H Transcription Factor Family AT3G23060 33.784 1.45e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01155 13 5760125 5764995 Bva13g01155 13 5760125 5764995 ECH
Bva14g01404 14 7001885 7005768 Bva13g01155 13 5760125 5764995 ECH