Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01153 atggaaacaaaaaaaactgaGGGAAAGAGGACCTTGAGGTACAAGGATGAGAAATTAgaagacgaagaagaagaagaagatgatgatgttaATGATGTGGGTTTTGGATCAGAAGatgggagaaagaagagagtgaTGACAGATCTCTATGGTTCTAAGAAAGGGTCCAAAGCTGGAGGCTCTTCAATGCCACCTTCTTGTCAAGTGAAAACTTGCCACACTGATCTGAGTGATGCTAAGCAGTACCATCGGAGGCACAAGGTCTGTGAGTACCATGCCAAGGCTCTTTCCGTACTCATTGCAGGGCTTCAGCAACGTTTTTGCCAGCAATGTAGCAGATTTCATGAGCTCTCCGAGTTTGATGAGTCTAAAAGGAGTTGTAGAAGACGATTGGCAGGACATAACGAAAGGCGTCGGAAGAATGCATCTGATTACCAAGGAGAAAGTTG 449 0.3831 METKKTEGKRTLRYKDEKLEDEEEEEDDDVNDVGFGSEDGRKKRVMTDLYGSKKGSKAGGSSMPPSCQVKTCHTDLSDAKQYHRRHKVCEYHAKALSVLIAGLQQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKNASDYQGES 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01153 149 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 142 IPR044817 GO:0003677
Bva13g01153 149 MobiDBLite consensus disorder prediction 1 67 - -
Bva13g01153 149 MobiDBLite consensus disorder prediction 34 50 - -
Bva13g01153 149 MobiDBLite consensus disorder prediction 19 33 - -
Bva13g01153 149 Pfam SBP domain 67 140 IPR004333 GO:0003677
Bva13g01153 149 Gene3D - 57 128 IPR036893 GO:0003677|GO:0005634
Bva13g01153 149 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Bva13g01153 149 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 15 142 - -
Bva13g01153 149 PIRSF SBP 1 149 IPR017238 GO:0003677|GO:0003700|GO:0009908
Bva13g01153 149 SUPERFAMILY SBT domain 65 145 IPR036893 GO:0003677|GO:0005634
Bva13g01153 149 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01153 Bva-Chr13 5750559 5752168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01153 54 144 SBP-box Gene Family AT2G33810 68.132 3.24e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva13g01153 SBP 5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01153 - - lang:109329071 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01153 13 5750559 5752168 Bva14g01400 14 6984736 6986473 BWGD
Bva13g01153 13 5750559 5752168 Bva13g01153 13 5750559 5752168 ECH
Bva14g01400 14 6984736 6986473 Bva13g01153 13 5750559 5752168 ECH
Bva07g01735 07 16110173 16111719 Bva13g01153 13 5750559 5752168 ECH
Bva09g00640 09 3334225 3336269 Bva13g01153 13 5750559 5752168 ECH
Bva07g01996 07 17419030 17420557 Bva13g01153 13 5750559 5752168 ECH