Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01147 ATGGATAACTTGCCATTTTCTGCATCCACCACTTCCACCTCCTCTTATGATATAGACCTTGCCAAATATTACATGGGTCTTCCCTTGAGTGCCCGTTTTTCCAGTTGTGAACCAGCAAATTTTCCTCCAACTCCCACTCCACAGTTCAGATTTCCATCTCCTTACCTCTTACCATATGACCAGAGTCTGAGTTTCCCACACTTGCACACTCTTCAGCTTGAAAATCAGCCTCTTGCCCATTTTCCAAGGTCTGTTCCCATTGAGCATCCTATGGGGCAGAACTTGTTTGGAATGCCATATTGGCAACCTCAAGGGTTGTCCCAGAAAGTGGATAGAACTTCGGATGGAGAATGGATAAGCAAGAAGATTGCTCGGGAACAAAGAAAATTGGCTAGACAAATGAGTAGAACTTTTTCATCTGGGTCTGCATCAAACCAGGAAGAAAGACTACCTAGTAGTGTTGTGGAGGCAAATCTGCAAAACACTGCCATTGTGAACAAGCATCCGAACACATTTTGCACTCCAGATGGGACGAAGCTCAGAGAATTACTGATAAAGACCTTAAAAGCCAGTGATATAGGTCCCCTAGGCCGCATTGTCCTCCCAAAGGTAAGGTTATTGTCAAGGCTTCAGTTTGAACTCCTGGCTATCTTTGGCTTCAAGAGGGAGGCTGAGGAAAATCTTCCTGCTCTTGGTGACAAGGAAGGAACTCAAATTGAACTTAAGGATTGTGGTTTGAGGGTTGGAACTTGGAAACACTTCACTTGAACCAAATCCTCCGATGACATTGACACCTCCTTCTTCGACAATGTGAACCCAGAAGAAGAAATCCCTTTTAACCCCCCGGAAAAACCCGAAGGCTTCGTTGCCCCTCCTTCCTTTGATGAGGGACCTATGGAGACTGAAGATGAAATTACCACAGCATATGAGGAGCTTTATGGTCCTGTGTACAGTGGTGTTTGCGTTCTTGGCCAAGATATACACGTAATAGACTCTAAGGTGGAGAAGGAAGATGGGTTTGGATCAAAAGTGAATATAGATAAGATCAGGGATGAGTTTGAAGAAAGAGTGGTACAGGTCAGAAGGGTCACCAAGGTGGTGAAAGGAGGGAAGCAATTGCGTTTCAGGGCAGTTGTGGTGGTGGGTGACAAGAAAGGCCAAGTGGGTGTTGGAGTTGGGAAAGCAAAGGAAGTGATTGCTGCAGTTCAGAAATCGGCTGTAGATGCAAGGAGAAATATCATCACAGTGCCCATGACTAAGTACCTGACTTTCCCACATAGATCTGATGGAGATTTCGGGCCAGCAAAGGTGATGCTTAGACCTGCTTCTCCTGGTACTGGAGTTATTGCTGGTGGGGCTGTGAGAATTGTTCTAGAAATGGCGCGAGTCGAGAATGCTTTGGGAAAACAACTCGGTAGTAATAATCCCCTCAACAATGCCAGAGCAACGCTTGTTGCTGTTCAAAAAATGAGGCAGTTCAGAGAAGTTGCTCAGGAGCGTGGGATCCCCATGGAAGTAATGAGAGTCTGCTTTTGTGATATTATGCCTATATTATA 1556 0.4537 MDNLPFSASTTSTSSYDIDLAKYYMGLPLSARFSSCEPANFPPTPTPQFRFPSPYLLPYDQSLSFPHLHTLQLENQPLAHFPRSVPIEHPMGQNLFGMPYWQPQGLSQKVDRTSDGEWISKKIAREQRKLARQMSRTFSSGSASNQEERLPSSVVEANLQNTAIVNKHPNTFCTPDGTKLRELLIKTLKASDIGPLGRIVLPKVRLLSRLQFELLAIFGFKREAEENLPALGDKEGTQIELKDCGLRVGTWKHFTTKSSDDIDTSFFDNVNPEEEIPFNPPEKPEGFVAPPSFDEGPMETEDEITTAYEELYGPVYSGVCVLGQDIHVIDSKVEKEDGFGSKVNIDKIRDEFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVDARRNIITVPMTKYLTFPHRSDGDFGPAKVMLRPASPGTGVIAGGAVRIVLEMARVENALGKQLGSNNPLNNARATLVAVQKMRQFREVAQERGIPMEVMRVCFCDIMPIL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01147 517 TIGRFAM rpsE_bact: ribosomal protein uS5 350 503 IPR005712 GO:0003735|GO:0006412|GO:0015935
Bva13g01147 517 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 255 506 - -
Bva13g01147 517 Hamap 30S ribosomal protein S5 [rpsE]. 333 505 IPR005712 GO:0003735|GO:0006412|GO:0015935
Bva13g01147 517 Pfam Ribosomal protein S5, C-terminal domain 429 499 IPR005324 GO:0003735|GO:0005840|GO:0006412
Bva13g01147 517 SUPERFAMILY Ribosomal protein S5 domain 2-like 422 500 IPR020568 -
Bva13g01147 517 ProSitePatterns Ribosomal protein S5 signature. 369 401 IPR018192 -
Bva13g01147 517 Gene3D - 419 507 IPR014721 -
Bva13g01147 517 PANTHER RIBOSOMAL S SUBUNIT 255 506 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva13g01147 517 Pfam Ribosomal protein S5, N-terminal domain 352 416 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva13g01147 517 SUPERFAMILY dsRNA-binding domain-like 347 417 - -
Bva13g01147 517 Gene3D - 343 413 - -
Bva13g01147 517 ProSiteProfiles S5 double stranded RNA-binding domain profile. 352 415 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01147 Bva-Chr13 5704713 5711823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01147 352 492 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 30.872 3.45e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01147 K02988 - gmx:100787105 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01147 13 5704713 5711823 Bva13g01147 13 5704713 5711823 ECH