Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01130 ATGGCGAGCCTGTTCAGATTTTCGTCCTCCGGTGAGACGTCGATGATCGTCACCAACACACCATCACAAGAACTCGCCCTCACCAACCTCGCCTACTGCAATTCCTCTGATCTTAAGAAATTCGCTGTCCTCGATTCCAAGGACCTCTTCCTCGCTTTAGTTGGCGATTCCTTTGTCTTCTCTCTTGCTGCTCATGAAAGCATACGCAGTGGCCATATTGCACTAAATTCAATTCAACGTCGTGTTGTCAGAGTTTCCTCGTCTGAATCGATATCTGTGAGCAGCTTCATCCCACCTGAGAATTTCCATTTGGCGATGCTAAACCTGGAATTGGACTTTATCAAAAAGGGAAGTAAAAGTGAACAGATTGATGCTGTTATGCTGGCTAAGCAACTCAGGAGGAGACTTGCGAACCAGGTTATGACAGCAGGGCAGAAAGTATTATTTGAGTATCATGGAAACAATTACAGTTTCACAGTCACTTCAGCTTCTGTTGAGGGCCaagaaaaatctaattctCTTGAAAGAGGAATGATTTCTCATGATACTTATATTGTTTTTGAAACATCACGTGATAGTGGAATAAAGATTGTCAATCAGCGTGAGGCTGCCAGTAGCAACATTTTCAGGCAGAAAGAATTTAATCTTCAGTCACTGGGTATTGGTGGACTGAGTGCTGAGTTTGCAGATATATTTAGAAGAGCTTTTGCCTCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCAAGCATGTGAAGGGTATGCTGCTCTATGGGCCTCCTGGTACGGGAAAGACTCTTATGGCTCGTCAAATAGGAAAAATGTTGAACGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTCTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGATCTCTTTGCTGATGCCGAACAAGATCAGAGGACTAATGgTGACGAAAGTGATTTGCATGTCAttatttttgatgaaattgatgCTATATGTAAGTCAAGAGGTTCCACTCGAGATGGTACTGGAGTTCATGACAGTATTGTGAACCAACTTTTAACAAAGATAGATGGTGTGGAGTCACTAAACAATGTTCTGCTTATTGGAATGACCAACAGAAAGGACTTACTTGATGAAGCCCTATTGAGACCAGGGCGATTGGAAGTCCAAGTTGAGATAAGCCTTCCTGATGAAAATGGCCGCATGCAGATTCTTCAAATTCATACAAACAAGATGAAAGAgaattcttttcttgctcCAGATGTGAGCCTTCAAGAGCTTGCTGCTCGAACAAAAAACTATAGTGGTGCAGAACTTGAAGGAGTTGTAAAAAGTGCAGTCTCGTATGCTTTGAATAGACAGTTGAGTCTAGATGATCTCACAAAGCCAGTGGAGGAAGAGAACATCAAGGTTACAATGGAAGACTTTTTGAATGCGCTTCATGAAGTTGTTCCTGCATTTGGAGCTTCTACTGATGACCTTGAAAGATGCAGaCTCAATGGCATGGTGGATTGTGGTGATCGACATAAGCACATTTATCAAAGAGCTATGTTACTAGTGGAGCAAGTCAAAGTGAGTAAAGGAAGCCCACTTGTTACCTGTCTTCTGGAAGGTCTTAGTGGCAGTGGTAAAACTGCACTTGCAGCTACAGTTGGTATTGACAGTGATTTCCCATATGTCAAGATAGTTTCAGCTGAAACAATGATTGGTCTCCATGAGAGCACTAAATGTGCACAGATTATTAAGGTTTTTGAGAATGCATACAAGTCACCGTTGAGCGTTATTATTCTTGATGACATTGAGAGGTTACTGGAGTATGTGGCTATTGGTCCACggttttcaaatttgatttcacAAACACTATTGGTCCTGCTCAAACGGCTACCTCCAAAGGGGAAAAAACTCCTTGTTCTCGGAACGACAAGTGAATTGACATTCTTGGACTCAGTTGGATTTTGTGATGCTTTCTCTGTCACTTACCACGTTCCCACATTGACCACAAATGATGCAAAGAAGgTGCTCAGACAGTTGGATGTTTTCGCTGATGAAGATATTGATGCTGCTGCGGAGGCTTTAAATGATATATCTATCAAGAGGCTATACATGTTGATTGAGATGGCAGCACAAGGGGAGCATGGTGGATCTTCTGAAGCAATCTATTCTGGCAAAGAAAAGATCAAGATCTCTCACTTCTACGACTGCCTTCAAGATGTCGTCCGAGtata 2234 0.4118 MASLFRFSSSGETSMIVTNTPSQELALTNLAYCNSSDLKKFAVLDSKDLFLALVGDSFVFSLAAHESIRSGHIALNSIQRRVVRVSSSESISVSSFIPPENFHLAMLNLELDFIKKGSKSEQIDAVMLAKQLRRRLANQVMTAGQKVLFEYHGNNYSFTVTSASVEGQEKSNSLERGMISHDTYIVFETSRDSGIKIVNQREAASSNIFRQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTNGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDENGRMQILQIHTNKMKENSFLAPDVSLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKPVEEENIKVTMEDFLNALHEVVPAFGASTDDLERCRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGLSGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFENAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLLVLGTTSELTFLDSVGFCDAFSVTYHVPTLTTNDAKKVLRQLDVFADEDIDAAAEALNDISIKRLYMLIEMAAQGEHGGSSEAIYSGKEKIKISHFYDCLQDVVRV 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01130 744 Gene3D - 399 486 - -
Bva13g01130 744 SUPERFAMILY Cdc48 domain 2-like 99 202 IPR029067 -
Bva13g01130 744 Gene3D - 12 96 - -
Bva13g01130 744 CDD AAA 255 398 - -
Bva13g01130 744 Pfam AAA+ lid domain 424 479 IPR041569 -
Bva13g01130 744 PANTHER BNAA03G50350D PROTEIN 13 40 - -
Bva13g01130 744 Pfam ATPase family associated with various cellular activities (AAA) 538 651 IPR003959 GO:0005524|GO:0016887
Bva13g01130 744 Pfam ATPase family associated with various cellular activities (AAA) 257 397 IPR003959 GO:0005524|GO:0016887
Bva13g01130 744 PANTHER VESICULAR-FUSION PROTEIN NSF 13 40 IPR039812 GO:0016887|GO:0035494
Bva13g01130 744 SUPERFAMILY ADC-like 12 96 IPR009010 -
Bva13g01130 744 PANTHER VESICULAR-FUSION PROTEIN NSF 64 743 IPR039812 GO:0016887|GO:0035494
Bva13g01130 744 CDD AAA 527 644 - -
Bva13g01130 744 Pfam Cell division protein 48 (CDC48), domain 2 122 188 IPR004201 -
Bva13g01130 744 Gene3D - 99 197 - -
Bva13g01130 744 PANTHER BNAA03G50350D PROTEIN 64 743 - -
Bva13g01130 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 496 IPR027417 -
Bva13g01130 744 Gene3D - 208 398 IPR027417 -
Bva13g01130 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 714 IPR027417 -
Bva13g01130 744 SMART AAA_5 533 654 IPR003593 -
Bva13g01130 744 SMART AAA_5 253 400 IPR003593 -
Bva13g01130 744 ProSitePatterns AAA-protein family signature. 368 386 IPR003960 GO:0005524|GO:0016887
Bva13g01130 744 Gene3D - 495 666 IPR027417 -
Bva13g01130 744 SMART CDC48_N_2 14 98 IPR003338 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01130 Bva-Chr13 5601837 5610885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01130 248 484 Calmodulin-binding Proteins AT3G56690 37.302 8.97e-41 159