Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01123 ATGGCCGTTGAGCACTATTATTCCCAGGAGTGGAAATCCATCCCAAGTGCCGTGACAGAGACAGAAGACTCCAATGGTTGTTTTGATTGCAACATCTGCTTAGAGTTTGCACACGAACCAGTTGTGACCCTCTGCGGCCACCTTTACTGCTGGCCCTGCATCTACAAGTGGCTTCATATCCAAAGTGCTTCTATTGCATCTGATGAGCACCCGCAGTGCCCGGTTTGCAAGGCAGATATATCCCATACCACAATGGTACCATTATATGGTCGTGGCCAGACCTCGTCTCAGAGCCAGTGTGACAGTAAGGCATCTCATCGCGATATATTCGTGCCGCCGAGGCCAGCTGCTTCCGGAGCTGAAGCTCTGCCGGGGACATCATCTCAAAATGTTGAGCAACTCTCATATCGTAGTCCTTATCAGAGTCCTCCTCTAGACAATACTTCGTCACATATGGCCACCGTGACGCCAGGATTCAACCACCCTGTGGTTGGGATGTTTGGAGAGTTGGTTTATGCTAGGGTGTTTGGCAACCCAGAAAACTTGTATGCCTACCCGAATTCGTATCACCTGATGGGAAGTAACAGCAATAGATTGAGAAGGCAGGAGATGCAGGCAGACAAGTCATTGAACAGAATTTCAATCTTCCTCTTTTGCTGCTTTCTCTTGTGTCTTATTGTCTTTTG 686 0.4854 MAVEHYYSQEWKSIPSAVTETEDSNGCFDCNICLEFAHEPVVTLCGHLYCWPCIYKWLHIQSASIASDEHPQCPVCKADISHTTMVPLYGRGQTSSQSQCDSKASHRDIFVPPRPAASGAEALPGTSSQNVEQLSYRSPYQSPPLDNTSSHMATVTPGFNHPVVGMFGELVYARVFGNPENLYAYPNSYHLMGSNSNRLRRQEMQADKSLNRISIFLFCCFLLCLIVF 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01123 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 228 - -
Bva13g01123 228 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Bva13g01123 228 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Bva13g01123 228 CDD RING-HC_AtRMA_like 28 78 - -
Bva13g01123 228 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Bva13g01123 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bva13g01123 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 135 IPR013083 -
Bva13g01123 228 SMART ring_2 30 76 IPR001841 -
Bva13g01123 228 SUPERFAMILY RING/U-box 26 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01123 Bva-Chr13 5554581 5556954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01123 23 214 C3H Transcription Factor Family AT4G27470 44.878 7.97e-49 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01123 K10666 - zju:107423986 322.783