Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01104 ATGTGCAGTGGTCCAAAAAGTAAGCTTTGCTCCTCAAACCACGACATGGGAAGCGAGCATCAAAAACAGAAAGATGATCTCTGCAAAACTGAGAACTTCTCAGTTTTGCTTGAATTGGCTGCATCTGATGATCTTGAAGCTTTCAGGACTGAAGTAGAAGGGAGAGGTTTTGATGTCAACGAGGCAAGCTTTTGGTATGGTAGGAGAATTGGGTCAAAGAAGATGGGGACTGAAAAGAGGACGCCCCTCATGATTGCTTCTTTATTTGGAAGTACTAAGGTTCTAAAGTACATAATTGAGAAGAGTGGGGTTGATGTGAATAGGGCCTGTGGTTCTGATAGAGCCACCGCTCTCCATTGTGCTGCTGCTGGCGGTGCAAAATCTTCGCCTGAGATTGTTAAGATCTTGCTTGATGCTCAAGCAGATGTTGATTGCCTTGATGCTAGTGGAAATAAGCCTGTTAATCTGATTGCTCCgggttttaatttgttgtcCAGTTCAAGAAGGAGGGGTATGGAGTTGTTGCTTAGAGGAGGAGAAGGAGCAGTCAATCAGGAGTCGGAACATAAAATCGCTGTGGCTTCTTTATCATCAAAAGAAGgaatggagaagaaagaatatgCTGTTGATGTAACATTGCCTGACATAAACAATGGAGTCTACGGAACAGATGAATTTAGGATGTATAGTTTTAAGGTGAAGCCTTGCTCCAGGGCATATTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCTGGGGAGAATGCAAGGAGAAGAGACCCAAGGAAGTACCCTTACAGCTGTGTTCCCTGCCCCGAGTTTCGCAAggggtcctgccagaagggtgATGCCTGTGAATATGCGCATGGTGTATTTGAGTCCTGGCTCCATCCTGCCCAGTACCGAACACGGCTTTGCAAGGAAGAGTCTCTGTGCACTAGGAAAGTTTGCTTCTTTGCTCACAAACCTGAAGAGTTGCGCCCTGTGTATGCTTCCACTGGGTCAGCTATGCCTTCTCCTAAGTCTTTCTCATCTAGTGGACTTGAAATGACAGCTATGAGTCCATTGTCTCTCAGTTCCTCATCTTTGCCGATGCCAACTGTTTCAACACCACCAATGTCTCCTTTGGCAACAGCTTCATCTCCCAAGAGTGGAAACCTGTGGCAGAATAAAATAGGCCTCACCCCACCATCCTTGCAGCTCCCCGGTAGCCGGCTGAAGAGTGCTTTGAATGCTAGGGACCTGGACTTGGAGATGGAATTGCTTGGACTGGAAAGTCCTGAGATTGCTCGAATCTCTTCTCCATCTTTCCGCAACAATAGGGTTGGTGATTTGAAGCCAACCAACCTAGATGACCTTTTAGGATCTATTGATCCTTTGGTATTTTCTCAATTACATGGTCTTTCAGTCCAACCTTCAACGCCTACTCAGTTGCAGTCTTCAAATGCACTTCAAATGCGCCAAAACATGAACCACCTTCGTGCAAGCTATCCAACAAACATGCCTTCATCTCCAGTGAGAAAACCCTCAACATATGGTTTTGACTCATCAGCTGCTGCGGCAGCTGCACTGATGAACTCTAGGTCTGCTGCCTTCTCAAAGCGAAGCCAAAGTTTTATTGATCGCGGGGCATTGAACCATCTTTCTGGGATATCTTCAGCTTTCAGCCCCGCCTGCAGGATGTCTTCTACCCTCTCAGATTGGAGTTCCCCAGATGGGAAATTGGATTGGGGCATCAATGGAGATGATCTGAACAAGCTGAAGAAATCTTCTTCTTTCGGGTTCCGAAACAATGGGGTAACTACCAGGTCCTTGTCTGGAAACGCTGAGCCTGATGTCTCTTGGGTTAATTCATTGGTTAAAGATGTTCCCTCTGAGAGTTCTGAGATGCTTTCGCCATGGGTGGAGCAGCTGTATGTAGAGCAAGAGCAGATGGTAGCATA 1943 0.4503 MCSGPKSKLCSSNHDMGSEHQKQKDDLCKTENFSVLLELAASDDLEAFRTEVEGRGFDVNEASFWYGRRIGSKKMGTEKRTPLMIASLFGSTKVLKYIIEKSGVDVNRACGSDRATALHCAAAGGAKSSPEIVKILLDAQADVDCLDASGNKPVNLIAPGFNLLSSSRRRGMELLLRGGEGAVNQESEHKIAVASLSSKEGMEKKEYAVDVTLPDINNGVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDACEYAHGVFESWLHPAQYRTRLCKEESLCTRKVCFFAHKPEELRPVYASTGSAMPSPKSFSSSGLEMTAMSPLSLSSSSLPMPTVSTPPMSPLATASSPKSGNLWQNKIGLTPPSLQLPGSRLKSALNARDLDLEMELLGLESPEIARISSPSFRNNRVGDLKPTNLDDLLGSIDPLVFSQLHGLSVQPSTPTQLQSSNALQMRQNMNHLRASYPTNMPSSPVRKPSTYGFDSSAAAAAALMNSRSAAFSKRSQSFIDRGALNHLSGISSAFSPACRMSSTLSDWSSPDGKLDWGINGDDLNKLKKSSSFGFRNNGVTTRSLSGNAEPDVSWVNSLVKDVPSESSEMLSPWVEQLYVEQEQMVA 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01104 647 ProSiteProfiles Ankyrin repeat region circular profile. 113 147 - -
Bva13g01104 647 Pfam Ankyrin repeats (3 copies) 71 145 IPR002110 GO:0005515
Bva13g01104 647 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 290 IPR000571 GO:0046872
Bva13g01104 647 MobiDBLite consensus disorder prediction 1 23 - -
Bva13g01104 647 SMART ANK_2a 113 145 IPR002110 GO:0005515
Bva13g01104 647 SMART ANK_2a 78 108 IPR002110 GO:0005515
Bva13g01104 647 SUPERFAMILY Ankyrin repeat 31 166 IPR036770 -
Bva13g01104 647 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 25 646 - -
Bva13g01104 647 Gene3D - 6 159 IPR036770 -
Bva13g01104 647 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Bva13g01104 647 SMART c3hfinal6 300 323 IPR000571 GO:0046872
Bva13g01104 647 ProSiteProfiles Zinc finger C3H1-type profile. 265 292 IPR000571 GO:0046872
Bva13g01104 647 ProSiteProfiles Ankyrin repeat profile. 113 148 IPR002110 GO:0005515
Bva13g01104 647 Gene3D - 266 328 - -
Bva13g01104 647 PANTHER UNKEMPT FAMILY MEMBER 25 646 IPR045234 -
Bva13g01104 647 MobiDBLite consensus disorder prediction 356 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01104 Bva-Chr13 5453893 5456788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01104 31 642 C2H2 Transcription Factor Family AT5G12850 39.377 1.54e-136 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva13g01104 Ank_2 1.4e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01104 - - gmx:100783376 908.286