Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01080 ATGGCGGATGCGAGCAAGGACTATTTGCAATCGGCTAACGAGGGTTTTGATGAGTTCAACGCTGGTTATAACGATGTGCTTATAGATCTTGATACAATTCTCAGCGTGCTTGATGAGAATTCCAATCCTTCTGAGAATAGTCCAGATGATTCCTCATTAAAAAATGTGTCTCCTGGAGAGTCTGGTACCCATGATAATTCTCAGCTCCAAAGTGGGAATTCTGTGATTGACTATGAAAATGAGAACCAGGGACCTTCTTCACCGACTTGCTTTTCCCTGCATGCTTTCCCTGGAAGTTTCAGGGATGTAAACTGTGTGGTTGAAAGTGAAGGGATTTCCTCCACTGAAAGGGCAGGATTTTCTGGATCTCAGATACCCTCTCATGGTGGGGAACCTAGTTTCACTGAAGCGCATTTAAacaatatgtcaaattttggAGATAGAGTGTATGCGAGTCTGTGGAATGGTGACAATGAGAGCAAGTTCAAACCTATTGGAGACGATGTTGAATCTGGATATACTTCACACAGCCCTATGATTGgggattttgatttaaattttggcCACTATGGAGCTCTTGATGAAGATACTACTGGTGGAGTTTCTGGGCAACAAGAGAATGACTCGTGTACATCTTTTGAAATGACATTTCTGGATGCTGATGGGTCTTCGCATATTGCCACTTCAGCTGATTCTGCAATTTGCCAAGGTTCCAATGTCCTTAGTGATTATGGAGACTATCATTCATCCATGCTTTATAGCATGGGTACAGATGATAGACCTTTTGTTGCTGACTCATCTCTTGGTTATTTGACTAATGGTGTTGGTTATCAAATTTGTTCAAGTGAAGAAAAAACTATGACTAACATGAAGAATGAGAAAGTGGAATTCTTAGCTGATACTGCACGTGTGAATAGTAACATGCATTCCACTACTAGTGGGGGAATACCTTTCCAGGATAGTAAATATGCGTCACCAGATAGTGgacattcttcatttttttgtgGTAATGTTCTCCTTGAAGAGAAGGGATCCGTACAGCTTTCACCTTGTGCTCCATACATGCAAAGCCTAGACCAAGCAATTTGTgtcaaagatgaaaaggatAAACTAATTACTGGTTACCAGAACTATGCTGATGCCAAGTTTAATACAGGGCAAGACCTGAAGCAATTACCTGGTATTTTTCCCTTTACTGTATGTCAGAGTTTTGATTTCTTGAAGCATGAGGATAAGGATAAAGTGATAATGTCTAATGGTTCCCATCAATATCaagatataaattatgaaactgCTAGTAAGTTTCCAGTAATCATGggcaattcaaatttaaaagccTTAGACGAATCTTTGCCCCATTCCAAGGTCTCAATTGCTGGTGAGAAGTTTGGTTGTGTAAAGAGTGGAGGAGAGGTCAACTTGTTTCACGATGGAAGTGCtgattcttatttttcaaaagttggCACTGAAGTGTTTAATAGAGATATCTTAGAGAAATCCCATGTTGAGGATGACCCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGGTCTGCCAACCTTGGGAATTCAATTGGTGCATCACAGTGTTCTACATATGGTGACTCCCATGATCACATGGTAGCTAACACAAGGTCAAAGGCATGTGATGAGCGATATATATTACAAGTAGCACTACAGGATCTATCTCAGCCAAAATCAGAAGTTACTCCACCAGATGGATTACTGGCAGTTCCTCTTCTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAAGAAACATCAAGTTTATATTGCTCTGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACTGTGTCAACTATTGCTTTATTACTAAAGGAAAGACCTTCAATATCTAGACCTTGTCAGAATGATCAAAAAGGTGAATTAGAAACTTTTAATCTGGATGCAGATGATGATATGCTTCCTGAGAATGGTGGAAAGAACAAAATCGCTAATACAGGTTCCAAAATGTCTAGTGGATGTCCTATGAAAAACATAGATCGAGCAAGGGGAAGGCCATCTGCAGGAACTCTTATTGTTTGCCCGACTAGTGTTCTGCGCCAGTGGGCTGAGGAGTTAAACACCAAAGTAACAAGTAAAGCAAATCTCTCTGTGCTAGTTTACCATGGAAGCAATCGATCAAAAGATCCTTATGAGCTGGCGAAGTACGATGTTGTTCTGACTACTTATTCAATTATCACTATGGAGGTCCCTAAGCAGCCAGTGGTCGTCAAAGATgatgaagagaaaggaaattctGAAGATCATGCTGTTCCATCAATGGTGTCaagtaagaaaaggaaataccCTTCTAGTTCTGGTAAAAGTGGGAAGAAGGGAGTGGATAGTGCATTGCTTGAGGCTGCTGCTGGTCCTCTAGCTAAGGTGGCATGGTTTAGGGTTGTTTTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCATGTTGGGGTCTTCGGGCTAAGCGCAGATGGTGTTTGTCGGGGACTCCTATCCAAAATGCAATTGATGATCTCTATAGTTACTTCAGATTTCTCAGATATGATCCTTATGCTGTTTATCAATCATTCTGTTCTACAATTAAGATACCAATTAGCAAAAATCCAAGCACAGGGTATAAAAAACTGCAAGCTGTCTTAAAGACAATAATGTTACGTCGAACCAAAGGCATGTTTCTTGATGGAGAACCCATTATTTCCTTGCCACCAAAGTCCGTGGAGCTGAGAAAAGTGGAATTTTCACCAGAGGAGCgtgatttttattcaaaactaGAAGCTGATTCACGTGCACAGTTTCAGGAATATGCGGATGCTGGAActgttaaacaaaattatgtcAATATCTTGCTGATGCTCTTGCGTCTTCGACAAGCATGTGATCACCCTCTACTTGTTAGGCCTTACAATTCTAGTTCTTTGTGGAAATCTTCAGAGGTGGCTAAGAATCTTCCTCGGGAGAAGCAAACATCTCTTCTGAAGTCTTTAGAAGATAATTTGGCTCTTTGCCGCATATGTAATGATCCTCCAGAAGATGCTGTCGTTGCTTCTTGTGGTCACGTTTTCTGTAACCAGTGTATTTGCGAACATCTTAATGCTGATAACAATCAATGCCCTGCTGCAAATTGCAAAGCTCGACTGAACATGTCTTCGGTGTTTTCCAGAGCTACATTAAGCAGTTGTCTTTCTGACCAGACATCTGATAATTTGCCTGGTTGCTCTGACTCTGAAGTTGTAAGATTTGAACCTTGTTTTCAGAGTCTGCCGCACaattcttcaaaaattaagGTTGCTCTTGAGGTCTTACAATCTTTATGCAAACCACAAGGCCAAGcatcaaataatatttctatGCAGTCTACCTCTGGGGAAGGTGGTGGCTGCGTTAGAAACTCTGATGATCAGAAGGGGAAATCCTTCAGGGATTCTCCTCAGAGTCCAAATCTGTCTGGTGATAGAAACCCCAATGCTTCGATTTCTATGGTTGGAGGGAAAGCAATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTGCTTGAAGCTTGTCTTAAAAATTCTTCCATTCAGTACAGAAGGCTTGATGGAACAATGCCGGTTCTTGCAAGAGACAAAGCTGTCAAAGATTTTAATACTCTCCCTGAGGTATCTGTTATGATAATGTCTTTGAAAGCTGCTAGTCTTGGTCTCAACATGGTGGCGGCTTGCCATGTTCTTTTGTTAGACCTATGGTGGAATCCCACAACGGAAGATCAAGCAATTGACAGAGCACATCGCATTGGGCAAACTCGTCCCGTTACAGTTTTGCGGCTAACCGTGAAAGATACCGTAGAAGATCGTATTTTAGCTCTACAGCAAAAGAAGCGACAGATGGTTTCCTCTGCATTTGGAGAGGATGAAACTGGTGGTCGCCAGAGTCGCCTCACCGTGGATGATTTGAAGTACTTGTTCATGATGTG 4016 0.3952 MADASKDYLQSANEGFDEFNAGYNDVLIDLDTILSVLDENSNPSENSPDDSSLKNVSPGESGTHDNSQLQSGNSVIDYENENQGPSSPTCFSLHAFPGSFRDVNCVVESEGISSTERAGFSGSQIPSHGGEPSFTEAHLNNMSNFGDRVYASLWNGDNESKFKPIGDDVESGYTSHSPMIGDFDLNFGHYGALDEDTTGGVSGQQENDSCTSFEMTFLDADGSSHIATSADSAICQGSNVLSDYGDYHSSMLYSMGTDDRPFVADSSLGYLTNGVGYQICSSEEKTMTNMKNEKVEFLADTARVNSNMHSTTSGGIPFQDSKYASPDSGHSSFFCGNVLLEEKGSVQLSPCAPYMQSLDQAICVKDEKDKLITGYQNYADAKFNTGQDLKQLPGIFPFTVCQSFDFLKHEDKDKVIMSNGSHQYQDINYETASKFPVIMGNSNLKALDESLPHSKVSIAGEKFGCVKSGGEVNLFHDGSADSYFSKVGTEVFNRDILEKSHVEDDPDVCIIEDISHPAPTSRSANLGNSIGASQCSTYGDSHDHMVANTRSKACDERYILQVALQDLSQPKSEVTPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALLLKERPSISRPCQNDQKGELETFNLDADDDMLPENGGKNKIANTGSKMSSGCPMKNIDRARGRPSAGTLIVCPTSVLRQWAEELNTKVTSKANLSVLVYHGSNRSKDPYELAKYDVVLTTYSIITMEVPKQPVVVKDDEEKGNSEDHAVPSMVSSKKRKYPSSSGKSGKKGVDSALLEAAAGPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYQSFCSTIKIPISKNPSTGYKKLQAVLKTIMLRRTKGMFLDGEPIISLPPKSVELRKVEFSPEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVRPYNSSSLWKSSEVAKNLPREKQTSLLKSLEDNLALCRICNDPPEDAVVASCGHVFCNQCICEHLNADNNQCPAANCKARLNMSSVFSRATLSSCLSDQTSDNLPGCSDSEVVRFEPCFQSLPHNSSKIKVALEVLQSLCKPQGQASNNISMQSTSGEGGGCVRNSDDQKGKSFRDSPQSPNLSGDRNPNASISMVGGKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMPVLARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRQMVSSAFGEDETGGRQSRLTVDDLKYLFMM 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01080 1338 Pfam Zinc finger, C3HC4 type (RING finger) 1023 1059 - -
Bva13g01080 1338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1005 1074 IPR013083 -
Bva13g01080 1338 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 513 1337 - -
Bva13g01080 1338 Pfam Helicase conserved C-terminal domain 1181 1280 IPR001650 -
Bva13g01080 1338 SUPERFAMILY RING/U-box 1019 1076 - -
Bva13g01080 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 916 1337 IPR027417 -
Bva13g01080 1338 SMART ultradead3 581 885 IPR014001 -
Bva13g01080 1338 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1174 1333 IPR001650 -
Bva13g01080 1338 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 513 1337 - -
Bva13g01080 1338 CDD SF2_C_SNF 1183 1290 - -
Bva13g01080 1338 ProSitePatterns Zinc finger RING-type signature. 1038 1047 IPR017907 -
Bva13g01080 1338 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 600 870 IPR014001 -
Bva13g01080 1338 ProSiteProfiles Zinc finger RING-type profile. 1023 1062 IPR001841 -
Bva13g01080 1338 MobiDBLite consensus disorder prediction 1131 1177 - -
Bva13g01080 1338 SMART helicmild6 1197 1280 IPR001650 -
Bva13g01080 1338 SMART ring_2 1023 1061 IPR001841 -
Bva13g01080 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 908 IPR027417 -
Bva13g01080 1338 MobiDBLite consensus disorder prediction 1161 1177 - -
Bva13g01080 1338 MobiDBLite consensus disorder prediction 1131 1148 - -
Bva13g01080 1338 CDD DEXDc_SHPRH-like 585 908 - -
Bva13g01080 1338 Gene3D - 923 1337 IPR027417 -
Bva13g01080 1338 MobiDBLite consensus disorder prediction 761 796 - -
Bva13g01080 1338 Pfam SNF2-related domain 605 985 IPR000330 GO:0005524|GO:0140658
Bva13g01080 1338 MobiDBLite consensus disorder prediction 38 71 - -
Bva13g01080 1338 Gene3D - 673 766 IPR038718 -
Bva13g01080 1338 Gene3D - 798 909 IPR038718 -
Bva13g01080 1338 Gene3D - 555 648 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01080 Bva-Chr13 5261052 5269813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01080 508 1337 RAD5 or RAD16-like Gene Family AT1G61140 61.566 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva13g01080 SNF2_N 1.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01080 - - lang:109332935 1564.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01080 13 5261052 5269813 Bva14g01306 14 6404570 6413005 BWGD
Bva13g01080 13 5261052 5269813 Bva13g01080 13 5261052 5269813 ECH