Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01079 atgaCAAtgatcaacaacaacaataacgTTAACGGGGTCGACGGCGACACAACGCTGACCAAAGTCTTTGTCGGAGGGCTAGCGTGGGAAACTCCGACGGAGGCCATGAAACAGCATTTCGACAAGTTCGGCGAGATCCTTGAGGCCGTCATCATCTACGATAAGCTCAGTGGCAGATCCAAAGGCTATGGCTTCGTCACCTTCAAGGACCCTGATGCAGCTAAGAAGGCTTGCCAGGATCCCGCGCCGATCATCAACGGCCGACGAGCCAACTGCAATCTGGCTTCGCTCGGCTCACGCCGCCAGAGGTCCTCCACTAATTCCCCTCCTCGACAACAACCTGGATCCAACGGTGGACCCAGGAAAGTACCGGCAGCTGCACCGGCCGCCAATCACGTCCCTTGGTATTTTCCGGTGGGGACACCTGCTTCTCCTTTCCATCGTCAGCATCAACCCCTTCCTGTATATGGGTACACCCCAACCTATTTTGCAACAGACATAAATTACAATCagAAGATGAATTTCAATGGCGGTGGGGCCTACGTGAATGCCCACTGTTACCCGAGCCAGGCTATCGTGGGTGCCAACAGAGCGATGCCAACATACCCCCACCCTTTCTACCAGTATCATGAGACGCACGCGATGGGGGTACCGGCACCCGCCCACGTTTTCCAGCCAATCACAGCAGGGCATTTCACCACGGTGCCGGCATTTGTGTCAAAACCCGCATCCATTACTCCCACCACAGGTGAATGCTTTAAGAAAGTTTGCTG 773 0.533 MTMINNNNNVNGVDGDTTLTKVFVGGLAWETPTEAMKQHFDKFGEILEAVIIYDKLSGRSKGYGFVTFKDPDAAKKACQDPAPIINGRRANCNLASLGSRRQRSSTNSPPRQQPGSNGGPRKVPAAAPAANHVPWYFPVGTPASPFHRQHQPLPVYGYTPTYFATDINYNQKMNFNGGGAYVNAHCYPSQAIVGANRAMPTYPHPFYQYHETHAMGVPAPAHVFQPITAGHFTTVPAFVSKPASITPTTGECFKKVC 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01079 257 PANTHER GEO13361P1-RELATED 2 251 - -
Bva13g01079 257 SUPERFAMILY RNA-binding domain, RBD 18 120 IPR035979 GO:0003676
Bva13g01079 257 MobiDBLite consensus disorder prediction 97 115 - -
Bva13g01079 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 97 IPR000504 GO:0003723
Bva13g01079 257 SMART rrm1_1 21 93 IPR000504 GO:0003723
Bva13g01079 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 79 IPR000504 GO:0003723
Bva13g01079 257 MobiDBLite consensus disorder prediction 97 125 - -
Bva13g01079 257 Gene3D - 5 113 IPR012677 -
Bva13g01079 257 CDD RRM_RBM24_RBM38_like 20 95 - -
Bva13g01079 257 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 2 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01079 Bva-Chr13 5256125 5258274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01079 10 96 C2H2 Transcription Factor Family AT2G19380 40.230 6.49e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01079 - - qlo:115954679 323.553