Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01049 ATGGCTACTGGTTCGTCTTCGTCTTCGTCTTCATCTAAGGTTTGCTATAACTCAGACTGCAAGGAATTGAAGTCAGAGAGGCCTAGGAAGGGTTGGAGGCTGCGCACCGGGGAGTATTGCGAGCTTTGTGATAGATGCGGgtcAGTTTTCGAAGAAGGAAGGTTCTGTCAGATTTTTCATGCAAATGCATCTGGTTGGAGGAATTGTGAGACCTGTAGGAAGCGGATCCATTGTGGGTGCATAGCTTCTAGTCATGCCTTTACCTTATTGGATCCTGGAGGTGTGGAATGCTTTACATgctccaagaaaaaaattattttgCCATCAAATCCACCATGGTCACcatctttttcccttcaatctcatttttctgagaaaaTATCTGAGAGACTTAAAGACCTGTCTGCAAAAAATTGGAGTCAGTTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTTTGTTTGGTTCTTCAGTTTCTTCATCTGACGTGCATCCAGATATACTGTCTCGAGTTGATATATCAACGGCTATTGACAAAATATATGGAAATGAAAGGTTATCCGCCTCTTTGctggaaaacaaaaatgaggATTTGTCTGGAATGTCAGTTAATTGGAGTGTAAAGCTTGGCGCACAGGAAATGATGCTCTTAAATGGAATTAGGAATGAGGATAAATCAAGTTCTTGTTTAAATATGTCCCAACAGCCTTCATTGAAAGAAGATTCATCTACACCTCAGTTTGGTTTAGGTGTACCTTATGCATCTCCAAATGAAAGAAATGGTCAAATTGGCATAACTGGAAGTTATCCACCTCAAAATCCTACACCTCCTCAGGCAAAGCAATTTAGTAATAATGTACCTCTTGCACTTGACTCATCAAGTGAAGCTCAGAGTCGCAATGGACGGCCTCGTGCAGACACCCGAGGCAGAAACCAGTTACTACCACGGTACTGGCCCAGGTGTACTGATCAGGAGCTACAGAAAATATCTGCAGATTCTAATTCTGTAGTTACCCCATTGTTTCAAAAAACTTTGAGTGCTAGTGATGCTGGACGAATTGGGCGATTAGTGCTACCAAAAAAGTGTGCTGAGGCCTACTTTCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATTCAAAAGGCAAGGAATGGATATTTCAGTTCCGTTTCTGGCCAAACAATAATAGCAGAATGTATGTGTTAGAGGGTGTCACTCCTTGCATACAGTCCATGCAATTACAAGCAGGTGACACAGTTACCTTTAGTCGGTTGGAGCCAGAAGGAAAGTTGATTATGGGATTTCGAAAGGCTTCAAGTGCTATGCCATCTGATCAGGACAATGAAACAACTAAGACTGGAAATGGGTTTTCCACTCATGGTGAAGTTGAATTGACAGATCCTAGTTCATGGTCTAAAGTTGACAAATCAGGATACATCGCAAAAGAAGCACTAGGGAACAAACCTTTGATTTccagaaagagaaagactAGCACCTTGGGTTCAAAGAGTAAACGTCTGCGAATTGAAAATGAGGACCTGATAGAGCTGAAGATTACATGGGAAGAAGCTCAAGGTCTGCTCCGTCCCCCGCCTAACCATGTGCCTAGCATTGTGGTGATTGAAGGCTTTGAATTTGAGGAATATGAGGATGCTCCTGTGCTTGGGAAGCCAACATTTTATACCAATGACAAAGCAGGTGAAAAGATTCAGTGGGCTCAATGTGAAGATTGTAACAAGTGGCGCAAGTTGCCTGCTAGTACTCTTCTTCCATCAAAATGGACATGTTCTGATAATTCATTGGACCCAGAGAGATCTGCTTGCTCAGCAGCACAAGAATTGACAGCAGAAGTGCTTGAGGATTTGCTACCTCATTGTAATTCAGTTTCCAAGAAAATGAAGGCTGCTAAGCAGGATCTTGATAATGTTGAAGCTTTGGAAGGACTTGATACACTTGCAAACCTAGCTATCTTGGGAGAGGGGGAACTCCCATCATCTGCCCAGGCCACAACAAAGCACCCACGACATAGACCTGGCTGTTCTTGTATTGTCTGCATTCAGCCTCCCAGTGGGAAGGGCCCCAAGCATAAGCAGTCATGCACGTGTAATGTCTGCCTGACAGTAAAGCGCCGTTTCCGCACCCTAATGTTAAGGCGCGAAAAGAAACAATCAGAAAGAGAAGCAGAGACAACACGGAAAAAGATTCAGCAGCAGCAGGCACCAACTTTGCCTGAAATTTTGCTTGACGATGATTCCCTGCCTTGTAGCAACACAGGAGATAGTAGTCCAAATCAGATCAGGGAGGGTAATGACGGTTCTGATGATGACCCTAACAGAGTAAAATCATCTGCTTCAGCCTCACCATTTAAAGGCCAAATTGATCTCAATATCCAGCCAGAGCGAGAGGAAGAGTTGTCACCTGGTTCAGATTCTGGTAGCATGATGAAGTTGCTCCATGATGCTACCGAGAGATATCTCAGGCAGCAGAGTATGGCAAGCCCTGGTGTTGGAGATTCATCAGGCATCCAGTCACAGGGTATTGGAGATGAACTCAGGGAAGATAAACTTAGCAATGGTGTTGCCCttggtaataataataataataatcataatgcCGATGAGGATCATGCCCAGAGTTTGCAGTTGAATGTGTG 2672 0.4229 MATGSSSSSSSSKVCYNSDCKELKSERPRKGWRLRTGEYCELCDRCGSVFEEGRFCQIFHANASGWRNCETCRKRIHCGCIASSHAFTLLDPGGVECFTCSKKKIILPSNPPWSPSFSLQSHFSEKISERLKDLSAKNWSQLAGSGPVPWKQAPSLFGSSVSSSDVHPDILSRVDISTAIDKIYGNERLSASLLENKNEDLSGMSVNWSVKLGAQEMMLLNGIRNEDKSSSCLNMSQQPSLKEDSSTPQFGLGVPYASPNERNGQIGITGSYPPQNPTPPQAKQFSNNVPLALDSSSEAQSRNGRPRADTRGRNQLLPRYWPRCTDQELQKISADSNSVVTPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGKLIMGFRKASSAMPSDQDNETTKTGNGFSTHGEVELTDPSSWSKVDKSGYIAKEALGNKPLISRKRKTSTLGSKSKRLRIENEDLIELKITWEEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTFYTNDKAGEKIQWAQCEDCNKWRKLPASTLLPSKWTCSDNSLDPERSACSAAQELTAEVLEDLLPHCNSVSKKMKAAKQDLDNVEALEGLDTLANLAILGEGELPSSAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQSCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKIQQQQAPTLPEILLDDDSLPCSNTGDSSPNQIREGNDGSDDDPNRVKSSASASPFKGQIDLNIQPEREEELSPGSDSGSMMKLLHDATERYLRQQSMASPGVGDSSGIQSQGIGDELREDKLSNGVALGNNNNNNHNADEDHAQSLQLNV 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01049 890 MobiDBLite consensus disorder prediction 444 476 - -
Bva13g01049 890 MobiDBLite consensus disorder prediction 262 286 - -
Bva13g01049 890 CDD B3_DNA 342 443 IPR003340 GO:0003677
Bva13g01049 890 Coils Coil 632 652 - -
Bva13g01049 890 MobiDBLite consensus disorder prediction 447 476 - -
Bva13g01049 890 MobiDBLite consensus disorder prediction 723 820 - -
Bva13g01049 890 Pfam CW-type Zinc Finger 577 619 IPR011124 GO:0008270
Bva13g01049 890 Gene3D - 568 626 - -
Bva13g01049 890 SUPERFAMILY DNA-binding pseudobarrel domain 341 444 IPR015300 -
Bva13g01049 890 MobiDBLite consensus disorder prediction 836 852 - -
Bva13g01049 890 Pfam B3 DNA binding domain 344 443 IPR003340 GO:0003677
Bva13g01049 890 ProSiteProfiles B3 DNA-binding domain profile. 344 445 IPR003340 GO:0003677
Bva13g01049 890 MobiDBLite consensus disorder prediction 760 774 - -
Bva13g01049 890 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 10 818 - -
Bva13g01049 890 MobiDBLite consensus disorder prediction 836 890 - -
Bva13g01049 890 MobiDBLite consensus disorder prediction 865 890 - -
Bva13g01049 890 ProSiteProfiles Zinc finger CW-type profile. 572 622 IPR011124 GO:0008270
Bva13g01049 890 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 10 818 - -
Bva13g01049 890 SMART B3_2 344 445 IPR003340 GO:0003677
Bva13g01049 890 Gene3D - 322 448 IPR015300 -
Bva13g01049 890 MobiDBLite consensus disorder prediction 724 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01049 Bva-Chr13 5096003 5106452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01049 280 728 B3 DNA Binding Superfamily AT4G32010 55.315 2.63e-163 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva13g01049 B3 6.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01049 - - gmx:100807252 1431.39