Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01028 ATGGGTAGAGCACCGTGTTGTGACAAGAATGGCCTCAAGAAAGGGCCATGGACAACGGAGGAAGATCAGAAACTCGTTGATTACATTCAGAAACATGGCTATGGCAACTGGAGGACACTGCCTAAGAGTGCTGGGTTACAAAGGTGTGGGAAGAGTTGCCGTCTCCGGTGGACAAACTATCTCCGGCCAGACATCAAGCGTGGTCGGTTTTCTTTCGAAGAGGAGGAGACAATCATACAACTACATAGTATTCTTGGCAACAAGTGGTCTGCAATTGCTTCGCGATTACCTGGGAGAACAGACAATGAAATCAAGAACTACTGGAACACACACATTCGGAAAAGGCTTCTTAGGATGGGGATTGATCCAGTGACACACAGTCCACGACTTGACCTCCTAGACCTCTCTTCTATTCTGAGCTCATCTCTCTGTGGCAACTCGTCACAGATGAACATTCAAAGGTTTCTGGGCATGCAGCCACTGGTGAACCCAGAGCTTCTAAAGTTAGCTTCTTCGCTCATTCAATCCCAGCAACGTGAGAACCTTAACTTCTGCGCTCAAAATAGTCAACAAAACCAGCTCTGCGGTCCACAAATTCAGAACCAATTCCCACAATTTGTCATGGACCCGGTCCAAGAAAACCCGGTTCTAGCTGAAGCACAGTCAATAGTTGAACCAAATGTGGATGCTTACCAATCAAATTTCCCTGTCTTTGGCTCTCAACATTCTCAGCTAAGTGACTGGCAAGGCAATGGAATAGCAGCAGCAGAGGACTACGTGCCACAGTTACCAAGCTACGATTTTTACAGTTCTGATAATCAGAATCTCTTGTCTGAAACGTCAACGTTTCATTCCGGCTACCGGAACTTCAGCTTGGCTTCAGTTCTGTCAACGCCGTCGTCGAGCCCAGCGCCGTTGAACTCGAATTCTACGTATGTGAATAGCAGCAGCACTGAGGATGAAAGAGAGATCAGCTATGGCAGCAGCAACGTTTTGAGATTTGAAATCCCTGATATTGTAGATGTTAATGAGTTCAtgcaaacaaatta 1049 0.4604 MGRAPCCDKNGLKKGPWTTEEDQKLVDYIQKHGYGNWRTLPKSAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSLCGNSSQMNIQRFLGMQPLVNPELLKLASSLIQSQQRENLNFCAQNSQQNQLCGPQIQNQFPQFVMDPVQENPVLAEAQSIVEPNVDAYQSNFPVFGSQHSQLSDWQGNGIAAAEDYVPQLPSYDFYSSDNQNLLSETSTFHSGYRNFSLASVLSTPSSSPAPLNSNSTYVNSSSTEDEREISYGSSNVLRFEIPDIVDVNEFMQTN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01028 349 MobiDBLite consensus disorder prediction 299 321 - -
Bva13g01028 349 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva13g01028 349 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva13g01028 349 CDD SANT 69 112 IPR001005 -
Bva13g01028 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 257 341 - -
Bva13g01028 349 Gene3D - 13 66 - -
Bva13g01028 349 CDD SANT 16 61 IPR001005 -
Bva13g01028 349 PANTHER PROTEIN ODORANT1-LIKE 1 250 - -
Bva13g01028 349 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva13g01028 349 PANTHER PROTEIN ODORANT1-LIKE 257 341 - -
Bva13g01028 349 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Bva13g01028 349 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva13g01028 349 SMART sant 13 63 IPR001005 -
Bva13g01028 349 SMART sant 66 114 IPR001005 -
Bva13g01028 349 Gene3D - 69 116 - -
Bva13g01028 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
Bva13g01028 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva13g01028 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01028 Bva-Chr13 4968977 4970739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01028 1 346 MYB Transcription Factor Family AT4G21440 56.948 2.26e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva13g01028 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01028 K09422 - gmx:778071 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01028 13 4968977 4970739 Bva14g01251 14 6117715 6119154 BWGD