Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01026 atggaggaggaggaggctTTACCGGACCATCTCCGTTGTAGCCGCAACGACGGTCGTCAATGGCGGTGCCGTCGAAGGGTCATGGACGACCTGAAGCTCTGTGAGATTCATTATCTTCAAGGGCGCCATCGGCAATACAAGGAGAAGGTCCCGGAGTCACTGAAGCTTCAGAGAAAGCCCAAAAAGGGGTTTAATTTTAGGAATGTTGAAAATGGCCCTGTTCTCAGCAACGTTGAAATTAGGGCACGGAAAGTCAGGAAGATGGCGAGGTTGATGAAGAAGAGGCGCAAACCTTCAGATGGGTCTGAAGCATTGGATGGTCCTGTGAGAAAGAAGCCCTTGAAACCAGGTCGTGGAGATATGCAGTTGGAGTTGATAAGGATGGTGTTGAAGAGAGAGGTCgagaagagaaggaagaagcagggtgagaagaggaagaacaagaacaagaagaaggaGATTGAAATGGAGTTGGAGATGGAGGAGGAGCTACATCACACTGAGGAAGAGTTAACGAGAGAATTGCCTAATGGGTTAATGGCAATATCTCCTGCATTGACGCCTCATGATTACAGCAATGTGGGTTCCCCTTGTGATGTTAAAGTTGGGGTCGATTATAAAACAATTACTCCTCGTTACTTTCGTTCCAAGAATGTTGAAAGGCTCCCTGTTGGCAAGTTACAGGTTGTACCAGATGGGCGAAACCTGAAGAAGGCTAGGAGAAAGAAGTGTCATTGGTGCCAGAGAAGCGATTCTTGGAATCTTATAAAGTGCTCGAGCtgtcaaaaagaatttttttgcaTGGATTGCATCAAAGAACGGTATTTTGatactcaaaatgaagttaAGATGGCATGTCCAGTTTGTCGAGGAACATGCACCTGCAAAGACTGCTTGGCAAGTCGATCTAAAGACAGTGAAAGTAAGGAACTTCTGGCTGGTAAGACCAGAGTTGACAGAATATTGCATTTCCATTATTTAATCTGTGTGCTCCTTCCATTgcttaaacaattaaatgaagAACAGAATGCTGAGCTTGAAAtagaagcaaaaataaaagGGGAAAGACCCTCTGATGTTCACATAGAGCAGGTTGAATTTGGCTGCAATGAGCAATATCAGTGTAATCGCTGCAAAACTCCCATTTTCGATCTCCATAGAAGCTGCCCTAGTTGTTCCTATAGGCTTTGCTTAAGCTGTTGTCGGGAATTATCTCAAGGCTGCACCTCTGGAGAATTTAACTCATCAAAATCCAAGTTTCATGGTAAAATGAAAGCTTCCATTGCCAGCGAAAAGCACTTTTTCAATAAGAAGGCTGCTTGTAAAGGAAAATCAATTGCTACTTCGTCATTGCCTAAATTGAATCGTTGTAATGGAACTGGCAGTGTATCTTGCCCGCCCAAAGAGGTTGGTGGGTGTGGTGACAGCCTTCTTAATTTGAGATGCTTGTTTCCTGTGAATTGGACAAAGGAGATGGAAATAAGTGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAGAAGTTCGTGCTGCTCACTATGTCTTGACCCAGATCATAAACTAGATGGATTTAAACAGTTGCAAGAAGCAGCTATGAGAGAAGATTCAAATGACAACTACTTGTTTTATCCCACACGTTCGGACATCAATAGTGATCATTTTGAACACTTTCAGAAGCACTGGGGCAAAGGCCATCCTGTGGTAGTGAGAGATGTGCTCCCAAGTACATCTAACCTCAGTTGGGATCCACTGGTCATGTTCTGTGCTTATCTTGAGAGGAGCATCACAAgatatgaaaacaataaagaatTACTGGAAGCTTGTCTGGATTGGTGTGAGGTTGAAATTAACATTAGGCAGTATTTTAGCGGCTCTCTTAAAGGTTGGCAACCAAAAAACATGTGGCATGAGGTGTTAAAATTGAAGGGATGGCTGTCTTCTCAACTATTCAAAGAACAGTTTCCAATTCATTTTTCTGAAGTTATCGATGCTCTCCCACTTCAAGAATACATGAATCCCACTTCTGGTCTTCTAAACTTAGCTGCAAATTTGCCCCAAGGAAGTGCAAAACATGAACTAGGACCACATGTCTATATTTCATATGGATGTGCTGAGAAACAAGATGATTCTGTGACAAAACTTTGTTATGACTCTTATGATGtgGTGAATATTATGGTACATACGGCAGATGTTCCTCTCTCTACAGAACATCTtagtaaaataagaaagttgcTCAAAAAGCACAAATCTCTGTGTGAAAAAGAGTCATCAGATATTACAAGCGAGCAACTGAAGGAAAAGATTGCAAAAGGAAATTCATTGTTGCATGCTGAAGACGTGGACCAAGCAGAAGTTCAGAGTGTTGTTAGAGAAGAAACACAGTTTCTTCGGAGAGTCAATCGAACAGCTTGCATCTCCTCTGAAGCAAAACAAGTAGTTAGTCAGAGTATTGCTAGCAATGTTTCTCAAAATGGGGAATGCGGTTCTGATTCTGATTCTGATACTGATTCTGACCCCTCTCTATTTCTCCGTGCAACTATTCAAACAACAGGAATGTCTAGAAATCGTAATTACAGAAATACGATTGAAATTCTgaataatgaaagaaataagaagtTAGCTGGGGATTCTTGTGCCCAGTGGGATGTTTTTCGCAGACAAGATGTTCCAAAGCTCATAGAATACCTCAAAAAACACTCCGATGAATTTTCACGTGCCCAAGACTATCACAAGCAGATGGTTCATCCAATTCTAGATCAGAGATTCTTCCTTGACAACTTTCACAAAATGCAGCTCAAGGAGGAGTTTGAAATTGAACCATGGACTTTTGAGCAAGATGTTGGGGAAGCTGTAATCATTCCTGCTGGATGTCCATACCAGATTAGGCATCCTAAGTGTTGTGTTAGTGTGGCGTTGGAATTTCTGTCCCCTGAAAATGTTCCTGAGTGTATCCAGTTGACTGATGAAGTGCGTCTGCTCCCAGACGACCATGATGCAAAAGTAGACAAGCTAGAGGTGAAGAAAACGGCTCTATACAGCATGAGTAcagcaataaaagaaatacgTGACCTAACAAGCAAAACATG 3098 0.3948 MEEEEALPDHLRCSRNDGRQWRCRRRVMDDLKLCEIHYLQGRHRQYKEKVPESLKLQRKPKKGFNFRNVENGPVLSNVEIRARKVRKMARLMKKRRKPSDGSEALDGPVRKKPLKPGRGDMQLELIRMVLKREVEKRRKKQGEKRKNKNKKKEIEMELEMEEELHHTEEELTRELPNGLMAISPALTPHDYSNVGSPCDVKVGVDYKTITPRYFRSKNVERLPVGKLQVVPDGRNLKKARRKKCHWCQRSDSWNLIKCSSCQKEFFCMDCIKERYFDTQNEVKMACPVCRGTCTCKDCLASRSKDSESKELLAGKTRVDRILHFHYLICVLLPLLKQLNEEQNAELEIEAKIKGERPSDVHIEQVEFGCNEQYQCNRCKTPIFDLHRSCPSCSYRLCLSCCRELSQGCTSGEFNSSKSKFHGKMKASIASEKHFFNKKAACKGKSIATSSLPKLNRCNGTGSVSCPPKEVGGCGDSLLNLRCLFPVNWTKEMEISAEEIVCSYDFPETLDRSSCCSLCLDPDHKLDGFKQLQEAAMREDSNDNYLFYPTRSDINSDHFEHFQKHWGKGHPVVVRDVLPSTSNLSWDPLVMFCAYLERSITRYENNKELLEACLDWCEVEINIRQYFSGSLKGWQPKNMWHEVLKLKGWLSSQLFKEQFPIHFSEVIDALPLQEYMNPTSGLLNLAANLPQGSAKHELGPHVYISYGCAEKQDDSVTKLCYDSYDVVNIMVHTADVPLSTEHLSKIRKLLKKHKSLCEKESSDITSEQLKEKIAKGNSLLHAEDVDQAEVQSVVREETQFLRRVNRTACISSEAKQVVSQSIASNVSQNGECGSDSDSDTDSDPSLFLRATIQTTGMSRNRNYRNTIEILNNERNKKLAGDSCAQWDVFRRQDVPKLIEYLKKHSDEFSRAQDYHKQMVHPILDQRFFLDNFHKMQLKEEFEIEPWTFEQDVGEAVIIPAGCPYQIRHPKCCVSVALEFLSPENVPECIQLTDEVRLLPDDHDAKVDKLEVKKTALYSMSTAIKEIRDLTSKT 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01026 1032 ProSiteProfiles JmjC domain profile. 677 995 IPR003347 -
Bva13g01026 1032 Coils Coil 131 164 - -
Bva13g01026 1032 MobiDBLite consensus disorder prediction 95 118 - -
Bva13g01026 1032 ProSiteProfiles WRC domain profile. 7 53 IPR014977 -
Bva13g01026 1032 PANTHER PROTEIN B160 1 1031 - -
Bva13g01026 1032 MobiDBLite consensus disorder prediction 135 154 - -
Bva13g01026 1032 Gene3D Cupin 542 1004 - -
Bva13g01026 1032 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 1031 IPR045109 GO:0032454|GO:0033169
Bva13g01026 1032 Pfam WRC 8 49 IPR014977 -
Bva13g01026 1032 SMART cupin_9 658 995 IPR003347 -
Bva13g01026 1032 MobiDBLite consensus disorder prediction 91 118 - -
Bva13g01026 1032 Pfam JmjC domain, hydroxylase 881 978 IPR003347 -
Bva13g01026 1032 SUPERFAMILY Clavaminate synthase-like 557 1013 - -
Bva13g01026 1032 ProSiteProfiles Zinc finger RING-type profile. 244 290 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01026 Bva-Chr13 4951646 4956592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01026 8 70 GRF Transcription Factor Family AT2G22840 39.683 2.70e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva13g01026 JmjC 3.9e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01026 K15601 - gmx:100810673 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01026 13 4951646 4956592 Bva14g01249 14 6100235 6105603 BWGD