Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva13g01011 | ATGGCCACTCAGCTCCCGGACGACTTCAAGTGTCCGATTTCGCTAGAGATAATGTCCGACCCGGTTATCCTCTCGTCGGGTCACACCTTCGACCGAGACTCAATCCAACGGTGGCTCGACGCCGGTCACCGGACCTGTCCAATCACGAAGCTGCCCCTCCCGGACCACCCTTCCCTCATCCCCAACCACGCTCTCAGaagcttgatttcaaattACGCTCTCATTTCCCCTTTGAAACATCACCCTCCTCCTCAACCCGAAACCCTGATCTCCACACTTCTCTCCCGTTCATACTCCCTTGACTCCAAAATCGAGTCGCTGCGCCAGCTAACCCGGCTTTCAAAACGTGACTCGGTGTTCCGGCGGCGGTTGACTGAGTCAGGGGTCGTGTCGGCGGTGCTCAACTGTATTGACTCGGATGATCCCAGTCTTCAGGAGAAAGCTCTTTCCTTGCTGCTGAATCTCAGTCTAGACGATGACAACAAGGTTGGTTTGGTGGCGGAAGGCGTAATTGGTCGTCTTGTGGCGGTTTTGCTTGGTGGGTCCCCGGATTGCCGAGCGTTGGCAGCAACTATGCTGACGAGTTTGGCGGTTGTGGAAGTCAACAAGGTCACAATTGGTCGGTATCCTTGCGCAATAGGAGCTTTGGTTTCGCTTCTCAGAGATGGTAAAggcagagagaagaaagaagctgCCACAGCACTATATGCTATTTGCTCTTTTCCTGATAATCGGAGAAGAGCTGTGGAATGTGGGGCGGTGCCAATTCTGCTTAGAACTGCTGATTCTGGTCTTGAAAGGGCCATTGAAGTTCTGGGTATTTTGGCTAAGTGCAAGGAAGGTAGGGAGCAAATAGAAACGTATCATGGTTGTATACAGATTCTAGTCAAAGTGTTGAGGAATGGAAGCTCTAGAGGAGTTCAATATGCCCTGTTGGCACTCAACTCCCTTTGTTCTTATAGTGAACAAATGAGCTTAGAGGCTTTTAAAGAAGGGGTTTGGGGGATTTGTATGGGATTACTGGAGGatgataatgaaaaaataaggaGAAATTCTTCCAGTTTGATTCAGGTCTTTTCTGGAAACCATGCAATGAGCtg | 1100 | 0.48 | MATQLPDDFKCPISLEIMSDPVILSSGHTFDRDSIQRWLDAGHRTCPITKLPLPDHPSLIPNHALRSLISNYALISPLKHHPPPQPETLISTLLSRSYSLDSKIESLRQLTRLSKRDSVFRRRLTESGVVSAVLNCIDSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGVIGRLVAVLLGGSPDCRALAATMLTSLAVVEVNKVTIGRYPCAIGALVSLLRDGKGREKKEAATALYAICSFPDNRRRAVECGAVPILLRTADSGLERAIEVLGILAKCKEGREQIETYHGCIQILVKVLRNGSSRGVQYALLALNSLCSYSEQMSLEAFKEGVWGICMGLLEDDNEKIRRNSSSLIQVFSGNHAMS | 366 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva13g01011 | 366 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Bva13g01011 | 366 | PANTHER | U BOX DOMAIN-CONTAINING | 1 | 360 | - | - | |
| Bva13g01011 | 366 | Gene3D | - | 211 | 365 | IPR011989 | - | |
| Bva13g01011 | 366 | Gene3D | - | 84 | 210 | IPR011989 | - | |
| Bva13g01011 | 366 | SUPERFAMILY | RING/U-box | 3 | 74 | - | - | |
| Bva13g01011 | 366 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 8 | 1 | 360 | - | - | |
| Bva13g01011 | 366 | Pfam | Armadillo/beta-catenin-like repeat | 118 | 156 | IPR000225 | GO:0005515 | |
| Bva13g01011 | 366 | Pfam | U-box domain | 6 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Bva13g01011 | 366 | SMART | arm_5 | 278 | 319 | IPR000225 | GO:0005515 | |
| Bva13g01011 | 366 | SMART | arm_5 | 117 | 157 | IPR000225 | GO:0005515 | |
| Bva13g01011 | 366 | SMART | arm_5 | 158 | 198 | IPR000225 | GO:0005515 | |
| Bva13g01011 | 366 | SMART | arm_5 | 241 | 277 | IPR000225 | GO:0005515 | |
| Bva13g01011 | 366 | ProSiteProfiles | U-box domain profile. | 4 | 79 | IPR003613 | GO:0004842|GO:0016567 | |
| Bva13g01011 | 366 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 74 | IPR013083 | - | |
| Bva13g01011 | 366 | CDD | RING-Ubox_PUB | 9 | 50 | IPR045210 | - | |
| Bva13g01011 | 366 | SUPERFAMILY | ARM repeat | 89 | 360 | IPR016024 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva13g01011 | Bva-Chr13 | 4866663 | 4868026 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva13g01011 | 1 | 361 | U-box Gene Family | AT4G21350 | 62.602 | 1.25e-156 | 443 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva13g01011 | - | - | zju:107421885 | 560.836 |