Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00996 ATGTCCGGCACCCAATTTGAGATGGGCTCTCCGGAAAATCCCAATTGTGTATTCGATTATGGTCTCATAGCGGATATTCCCGTCCCTGGTGTTGACGTTCCTTCCCTTGACCTGCGAAATTTTTCTTGGCCATCTCATCATCCTCTCACTGCTCCCGCTTCCAATCTCAGTGTGGAGTTAGATGATTCGTATGGGGTTTCAGATGGCTTTACAGAGAATGGCTCTAGAAAACGCATAAGGTCCATATCCCACAACTCATCTGGTTCCAAAGCATGCAGAGAGAAAATGCGAAGGGATCGACTCAATGACAGGTTCATGGAACTGGGTTCTATCTTGGACCCTGGAAGGCCACCCAAAATGGACAAGGCTGTTATATTAAATGACGCAGTTCGAATGGTGTCGCAGTTACAGGAGGAAGCTCAAAAGCTTAAAGAGTCCAATGAGAATCTGCAGGAGAAAATCAATGAATTAAAGGCTGAGAAGAACGAGCTTCGAGATGAGAAGCTGCGGCTAAAAGTGGAGAAAGATAACCTTGAGCAGCAAGTTAAAGCCCTGAGCTCACAACCAGGCTTCCTGCCCCACCCACCCACCATTGCGGTTCCGTTTCCTGCACCAGGGCAAGTCGTTGGGGGCAAGCTGGTGCCATTCATGGGTTACTCGGGAGTTCCCATGTGGCAGTTTTTGCCCCCTGCTGCTGTTGATACCTCGCAGGACCATGTACATCGTCCCCCAGTTGCATA 740 0.4919 MSGTQFEMGSPENPNCVFDYGLIADIPVPGVDVPSLDLRNFSWPSHHPLTAPASNLSVELDDSYGVSDGFTENGSRKRIRSISHNSSGSKACREKMRRDRLNDRFMELGSILDPGRPPKMDKAVILNDAVRMVSQLQEEAQKLKESNENLQEKINELKAEKNELRDEKLRLKVEKDNLEQQVKALSSQPGFLPHPPTIAVPFPAPGQVVGGKLVPFMGYSGVPMWQFLPPAAVDTSQDHVHRPPVA 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00996 246 Pfam Helix-loop-helix DNA-binding domain 89 137 IPR011598 GO:0046983
Bva13g00996 246 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 10 246 - -
Bva13g00996 246 CDD bHLH_AtILR3_like 90 165 - -
Bva13g00996 246 Gene3D - 88 168 IPR036638 GO:0046983
Bva13g00996 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 136 IPR011598 GO:0046983
Bva13g00996 246 Coils Coil 126 188 - -
Bva13g00996 246 SMART finulus 91 142 IPR011598 GO:0046983
Bva13g00996 246 PANTHER BHLH TRANSCRIPTION FACTOR 10 246 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bva13g00996 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 164 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00996 Bva-Chr13 4797444 4799663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00996 8 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 58.091 1.47e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva13g00996 HLH 3.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00996 - - mnt:21402686 342.813