Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00993 ATGGGGCTGAAGGGCCAACTTCCACGTGGCGTTCAGAATTGCACGTCATTGACAGGTCTGGACCTTTCAATGAACCTGCTATCAGGATCCATCCCATCTGACAAATCAAAGTTAGCCAAGTTTGTTACCTCACTTGATCTTTCAAGTAACAAATTCAGTGGTGAAATTCCAGAAGATATTGCAAATTGCATTCATTTGAACACCCTTATACTTGCTGACAATCAGCTGAGCGGGGAAATTCCTCCACAACTTACGGCGGGGATGGCCAGGATTAAGGCATTTAGCGTAGCTGACAATTATTTGACAGGGCCAGTGCCTAATTTCAAAGAAGGTGTAGCTTCTTCTGATAGCTATGCTAACAATAGAGGACTTTGTGGAGGACCTTTGGCACCCTGTCACAAATCCTCCAAGGACTTCAAGGATGGTGCTGTTGttggtttttcattttcaataacttCGGTTgtggttatatatttattctatttcgTACCATGGGAACAACTaatgaagaataagaaaaagaagtggCTAAACGAGAGGAAATATCAACTAAGGTCTCAGGTATGCGACCTGGATGCGAAGTTCcttgagaaagaaagacaagagGTTTTAGAATGGACAATGATATTGGATTGGGAAAGATGGGGATGGATGTGCAAAGCCAGGCTACCCAATGGTTTGCTTCTAGCAGTAAAGAGAATATATGATCTTGATCTGTTCAAGAGGCAATTTGTCTCAGAAATAATGATTTTGGGAAGGTACAGACACAAAAACCTTATTCCTCTAATTGACTTTTGCATAGAACAAAAGGAGAGGATTCTAGCTAATCAGTACATGTCAAATGGAAGTCTTTTTGATTGGTTAAACCCTTTGGAAAGTTCAGCTATGAGGTTTTTAACAGTGAGAGGATACCGTTCTCCTTGGGAATCGGCGTACACGATCAACATTAGTGAAGGCCCCCGATCATTAGAACCCTTTgttaaattcttaataatgGGTACTATGGCAAATGCCATTTTTCTCTTCGgcattgcttttcttttctgcatgAATAATGTCACTGGAAATCTTCTCGATCTCATCCAAAATGACCCTGTTGAACTTTTTGATGTGACAAAATTCTATCACAAACCTACTGCAGAAGAAGTGGAATATGATGAAGACTATGTTCCTGGTAGCTATTATGACGCATTTGCGGCAGTATGGGACGCAGCATGCAGAAATAGCACTGGTTCTGTAAAGATTCTGGTCCCAAAAGGAACCTTCCTTCTTACCCCAATAGTCTTTAGTGGACCATGCAAAAGCGCAAAGCCCATCATCTTTGAAGTTGAGGGGACTATCGTATCTCCAACAAACCCTTCTCtgtttccaaataaaaaatggatcGAATTTTCAGACATTGATGGCTTGGTGCTGAATGGTAATGGAGTTTTCGATGGCCAAGGAGGTGTGGTTGATAATGAAACTCACGCGTCTGCTTGGGTCGCCAACGACTGcaagacaaacaaaaattgtgtTCCACCCTCGTCTAATCTGATGTTCGGAAAAGTAAACAACTCTATTGTGAGAGGGATCACTTCCTTAAATAGCAAATGGTTCCACTTCGACGTTTCTCAATGCAAAAACTTCACAGTCACTGACATCCACATAACTGCTCCTGGAGACAGTCCCAACACAGATGGAATACATCTTAGTGAATGCGATCTGGTGAATGTGGCCAATAGCAACATTGCAACTGGGGATAATTGCATTTCCATCGACCAAGGCTGCATCAACATTCATATCCATAATAATACCTGCGGTCTAGGCCATCGCGTCAGCGTTGGAAATCTTCGCTTGCAAAACGATGACAAAAGTTATGGTACTGAGACTGATATCTACTGCTTAAGATCCATTAAAGAATCTTTGAAAGACCCATATGGTTATTTATCTCCAATTTGGGACTTCGCCAACAATACAGGAGCCAAGTTTGTTACCTCACTTGATTTTTCAAGTAACAAATTCAGCGGCGAAATTCCAGAAGATATTGCAAATTGCATTCATTTGAACACCCTCATACTTGTGGACAATCAGCTGAGCGGGGAAATTCCTCCACAGCTTACGGCCGGGATGGCCAGGATTAAGGCATTTAGTGTAGCTGACAATTATTTGACAGGGTCAGTGCCTAATTTCAAAGAAGGTGTAGCTTCTTCTGATAGCGATGCTAACAATAGAGGACTTTGTGGAGGGCCTTTGGCACTCTGTCACAAATCCTCCAAGGACTTCAAGGATGGTGCTGttgttggtttttctttttcaataacttCGGTATCTAAGTTGAAAACTTCTGCTCCAACAATAAGCTTCACGGAACTGTATGATGCAACTAAAGGCTCTAGAATGGACAATGATATTGGATTGGGAAAGATGGGGATGATGTACAAAGCTAGGCTACCCAATGGTTTGCTTCTAGCGATTGCTTTTGACTACATTGAGGATATCCCGGACCAAAGGCCAACAGTGCTTGAAGTGTACAGGGCCCCTCGCGATCTCATCCAGAATGGCcctgttgaaatttttgatgTCACAAAATTCTATCGCAAACCTACTGAAGAAGAAGTGAAAAATGATGACGACTATGTTCCTGGTAGCTATTATGACGCATTTGCGGCAGTATGGGACGCAGCATGCAGAAATAGCACTGGTTCTGTAAAGATTCTGGTCCCAAAAGGAACCTTCCTTCTTACCCCAATAGTCTTTTGTGGACCATGCAAATGCGCAAAGCCCATCGTCTTTGAAGTTGAGGGGACTATCGTATCTCCAACAGACACTTCTCTGTTTCCAAATAAAAACTGGATCGAATTTTCAGACATTGATGGCTTGGTGCTGAATGGTAATGGTAATGGAGTTTTCGATGGACAAGGAGGTGTGGTTGATAATGAAAGTAATGTGTCTGCTTGGTCCGCCAACGACTGcaagacaaacaaaaattgtgtTCCACCCTCGTCTAATCTGAAATTCGGAAGAGTAAGCAACTCTATTGTGAGAGGGATCACTTCCTTAAATAGCAAATGGTTCCACTTCGAAGTTTCTCAATGCAAAAACTTCACAGTCACTGACATCCACATAACTGCTCCTGGAGACAGTCCCAACACAGATGGAATACATCTTAGTGAATGCGATCTGGTGAATGTGGCCAATAGCAACATTGCAACTGGGGGTGAAAGCGTTTCCATCGACCAAGGCTGCATCAAcattaatatcaataatattaCCTGCGGTCAAGGCCATGGCATCAGCGTTGGAAGCCGTCGCTTGCAAAACGATGACAAAAGTGTGGAAGGGGTCACTGTCACAGGCTGCACATTTAAGTA 3353 0.4023 MGLKGQLPRGVQNCTSLTGLDLSMNLLSGSIPSDKSKLAKFVTSLDLSSNKFSGEIPEDIANCIHLNTLILADNQLSGEIPPQLTAGMARIKAFSVADNYLTGPVPNFKEGVASSDSYANNRGLCGGPLAPCHKSSKDFKDGAVVGFSFSITSVVVIYLFYFVPWEQLMKNKKKKWLNERKYQLRSQVCDLDAKFLEKERQEVLEWTMILDWERWGWMCKARLPNGLLLAVKRIYDLDLFKRQFVSEIMILGRYRHKNLIPLIDFCIEQKERILANQYMSNGSLFDWLNPLESSAMRFLTVRGYRSPWESAYTINISEGPRSLEPFVKFLIMGTMANAIFLFGIAFLFCMNNVTGNLLDLIQNDPVELFDVTKFYHKPTAEEVEYDEDYVPGSYYDAFAAVWDAACRNSTGSVKILVPKGTFLLTPIVFSGPCKSAKPIIFEVEGTIVSPTNPSLFPNKKWIEFSDIDGLVLNGNGVFDGQGGVVDNETHASAWVANDCKTNKNCVPPSSNLMFGKVNNSIVRGITSLNSKWFHFDVSQCKNFTVTDIHITAPGDSPNTDGIHLSECDLVNVANSNIATGDNCISIDQGCINIHIHNNTCGLGHRVSVGNLRLQNDDKSYGTETDIYCLRSIKESLKDPYGYLSPIWDFANNTGAKFVTSLDFSSNKFSGEIPEDIANCIHLNTLILVDNQLSGEIPPQLTAGMARIKAFSVADNYLTGSVPNFKEGVASSDSDANNRGLCGGPLALCHKSSKDFKDGAVVGFSFSITSVSKLKTSAPTISFTELYDATKGSRMDNDIGLGKMGMMYKARLPNGLLLAIAFDYIEDIPDQRPTVLEVYRAPRDLIQNGPVEIFDVTKFYRKPTEEEVKNDDDYVPGSYYDAFAAVWDAACRNSTGSVKILVPKGTFLLTPIVFCGPCKCAKPIVFEVEGTIVSPTDTSLFPNKNWIEFSDIDGLVLNGNGNGVFDGQGGVVDNESNVSAWSANDCKTNKNCVPPSSNLKFGRVSNSIVRGITSLNSKWFHFEVSQCKNFTVTDIHITAPGDSPNTDGIHLSECDLVNVANSNIATGGESVSIDQGCINININNITCGQGHGISVGSRRLQNDDKSVEGVTVTGCTFK 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00993 1117 SUPERFAMILY L domain-like 4 722 - -
Bva13g00993 1117 SMART pbh1 1076 1096 IPR006626 -
Bva13g00993 1117 SMART pbh1 567 588 IPR006626 -
Bva13g00993 1117 SMART pbh1 540 566 IPR006626 -
Bva13g00993 1117 SMART pbh1 1026 1052 IPR006626 -
Bva13g00993 1117 Gene3D Phosphorylase Kinase; domain 1 200 278 - -
Bva13g00993 1117 SUPERFAMILY Pectin lyase-like 879 1116 IPR011050 -
Bva13g00993 1117 Gene3D Ribonuclease Inhibitor 2 140 IPR032675 -
Bva13g00993 1117 Gene3D Ribonuclease Inhibitor 646 756 IPR032675 -
Bva13g00993 1117 Pfam Glycosyl hydrolases family 28 894 1116 IPR000743 GO:0004650|GO:0005975
Bva13g00993 1117 Pfam Glycosyl hydrolases family 28 410 617 IPR000743 GO:0004650|GO:0005975
Bva13g00993 1117 PANTHER POLYGALACTURONASE 334 619 - -
Bva13g00993 1117 PANTHER POLYGALACTURONASE 849 1116 - -
Bva13g00993 1117 PANTHER - 334 619 - -
Bva13g00993 1117 PANTHER - 849 1116 - -
Bva13g00993 1117 SUPERFAMILY Pectin lyase-like 395 616 IPR011050 -
Bva13g00993 1117 SUPERFAMILY Protein kinase-like (PK-like) 215 298 IPR011009 -
Bva13g00993 1117 Gene3D - 846 1117 IPR012334 -
Bva13g00993 1117 Gene3D - 369 628 IPR012334 -
Bva13g00993 1117 ProSitePatterns Polygalacturonase active site. 1083 1096 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00993 Bva-Chr13 4768523 4786192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00993 396 618 Glycoside Hydrolase AT2G15460 45.291 3.17e-55 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Bva13g00993 Glyco_hydro_28 3.9e-47 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00993 - K01213 twl:120016454 254.603