Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00972 atggaGATTTCATCAACCGGAGGGTTACCTCAACTGGAAATGGAGGATCCTACTTGTTTTCTCCATCAGTGGCACTTAAACTTTTTAGATGACCCAAGTTTGCTGACAATAGCTGCTGCAGCTTTTGAAGAGAGCTTAGAACAGCCATCATTCTCTAGCCCAAGCTTCAATTCCGAAACTTGCATGGAAACTTCACTTATTGGCAATCAAATTAGACCCACAAAACAACAGAATACCAACAATTGGAGTTCCAATATTAGTGACCAGACATCATCAGGCCCAcaatttgcttcttcttcaaatgttctttcctttttcaattcaaatttcataaatcaaaTGGGCATTACAAAGCCTAAGGAGGAGATGGCACGTGCAAAGGTAACTGGTACAGTTCCTTCTGATATCTTGACATCTCAGGGATCGTTGTTGGGAAACCAAAACTATATGTTCAAGGCCTGTGAAAGGGCACAAAAGATTAGCAGTCCGAAAGTTCCTCAACCACAAGACCATATAATAGCTGAAAGGAAGCGGCGAGAGAGGCTTAGCCAGCGGTTCATTGCTTTATCCGCTCTTCTTCCTGGCCTAAAGAAGACAGATAAAGCTACTGTTCTTGGAGATGCAATCAAATACTTGAAGCAACTGAAAGAGAAAGTGAAGGTCCTTGAGGAGGAACAGACTAGGGCAAAGTCAATGCAATCTGTGGTAATCGTCAAGAAATGTCAACTAGTTGGTGATGTTGATGACTCTTACTCAGACTCTAGCGGTCCATTAATTGATGAGCCTTTACCTGAAATTGAGGCTAGATATTGTGATAGAAATGTGCTCATACGAATTCAttgtgagaaaaagaaagaagttgtTGAAAAAACAATGACCGAAATTGAGAAACTCCATCTAATAGTCACCAATAGCAGTATTATGACATTTGGGAGTTCTGCCCTTGACATAACAATTATTGCTCAGATGGACGTGGAGTTTTGCATGACACTGAAGGATCTCGTGAGAAACCTACGCTCAGCCTTTGGATCTTTCATGTG 1040 0.3875 MEISSTGGLPQLEMEDPTCFLHQWHLNFLDDPSLLTIAAAAFEESLEQPSFSSPSFNSETCMETSLIGNQIRPTKQQNTNNWSSNISDQTSSGPQFASSSNVLSFFNSNFINQMGITKPKEEMARAKVTGTVPSDILTSQGSLLGNQNYMFKACERAQKISSPKVPQPQDHIIAERKRRERLSQRFIALSALLPGLKKTDKATVLGDAIKYLKQLKEKVKVLEEEQTRAKSMQSVVIVKKCQLVGDVDDSYSDSSGPLIDEPLPEIEARYCDRNVLIRIHCEKKKEVVEKTMTEIEKLHLIVTNSSIMTFGSSALDITIIAQMDVEFCMTLKDLVRNLRSAFGSFM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00972 346 MobiDBLite consensus disorder prediction 74 95 - -
Bva13g00972 346 CDD bHLH_AtNAI1_like 169 240 - -
Bva13g00972 346 Gene3D - 167 238 IPR036638 GO:0046983
Bva13g00972 346 Coils Coil 205 232 - -
Bva13g00972 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Bva13g00972 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 232 IPR036638 GO:0046983
Bva13g00972 346 SMART finulus 172 221 IPR011598 GO:0046983
Bva13g00972 346 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Bva13g00972 346 PANTHER BHLH TRANSCRIPTION FACTOR 2 345 - -
Bva13g00972 346 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 2 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00972 Bva-Chr13 4677011 4678923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00972 152 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 53.807 1.86e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva13g00972 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00972 - - qsu:112040135 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00972 13 4677011 4678923 Bva14g01145 14 5578279 5580379 BWGD
Bva13g00972 13 4677011 4678923 Bva13g00972 13 4677011 4678923 ECH