Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00947 ATGGGGAGAGGGAAGATTGTGATTCGAAGGATTGACAATTCGACTAGCCGGCAAGTAACTTTCTCCAAGAGACGAAATGGACTGCTGAAGAAAGCTAAAGAGCTATCGATTTTGTGTGACGCGGAAGTTGGATTGATTGTCTTCTCCTGCACCGGCAGGCTTTACGACTATGCAAGCACGAGCATGAAATCAGTCATTGACCGCTACAAGCAGCTAAAAGTGGAAGAACATCAGCTTATGAATCCCGCTTCACAAGTCAAGTTTTGGCAGAGAGAAGCAGCAAGCTTGAGGCAACAACTACAGTACTTGCAAGAATGCCACAGGCAGTTGATGGGTGAAGAACTTTCTGGATTGGGCGTCAAAGAACTACAAAATCTGGAAAACCAGCTTGAGATGAGTTTAAAGGGTGTCCGTATGAAAAAGGATCAAATTTTAACTGAAGAGATTAAACAACTGCACCAAAAGGGAAATCTCATTCATCAAGAAAATATAGACCTCTATAAAAAGCTAGACCTCTTCCGTAAGGAAAACATAGAACTGCAGAAGATTTGTGAAGCAAGGAAATCCAATGGAGAAAAGACATCCAATTCTCCAAGCACTATCCAAGGACAATACGATCTACATATTCCTATTGGTCTCCAGCTAAGCCAGCCACAGCCTCAATACAGTGAACCATCAACCAAAGCAATGAAACTAGGGCTACAGCTGCACTA 713 0.4278 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSCTGRLYDYASTSMKSVIDRYKQLKVEEHQLMNPASQVKREAASLRQQLQYLQECHRQLMGEELSGLGVKELQNLENQLEMSLKGVRMKKDQILTEEIKQLHQKGNLIHQENIDLYKKLDLFRKENIELQKICEARKSNGEKTSNSPSTIQGQYDLHIPIGLQLSQPQPQYSEPSTKAMKLGLQLH 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00947 234 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Bva13g00947 234 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Bva13g00947 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva13g00947 234 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Bva13g00947 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva13g00947 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva13g00947 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva13g00947 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva13g00947 234 Pfam K-box region 84 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva13g00947 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Bva13g00947 234 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 233 - -
Bva13g00947 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bva13g00947 234 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva13g00947 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00947 Bva-Chr13 4528122 4539720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00947 1 234 MADS-box Gene Family AT2G14210 60.504 3.61e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva13g00947 K-box 1.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00947 K09264 - gmx:100808145 351.673