Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00938 ATGGATATAGTGAATCCGCAGCCACTGCAAGCTAGGCCATTTGATGATGAAGAGCTTCAACCGGTGCAGGTTCCCATGCATGTGGATGGGGTTGAAGGTGGAATGAACGCCCAGTATGTTAATGGAGGTTTTGATGAGGTCAGCAATGGAGTGGAAGAAGCTAAAGTGAGTTCTGGGTTATCTGGGGCAAATGATTGTACTGCGCAGTCTCGAACCAGTGAGCTCTCCATTTCCTTTGAAGGAGAAGTCTACGTTTTCCCTGCAGTTACCCCCGAAAAgGTGCAGGCTGTATTATTACTATTGGGAGGTCATGAGATGCCAAATATTGTCCCTAGCTCTGAGTTTTTGATGCAACAAGACATGAGGGGAATAAATGATGCTTCGCGAGGTTCAAAAATTTCACGGAGAATTGCATCCCTTGTTAGGTTCCGTGAAAAACGGAAAGAGAGATGCTTTGAGAAGAAAATTCGGTATACTTGCCGTAAAGAGGTTGCTCAGAGGATGCATCGCAAGAATGGACAATTTGCTTCACTGAAGGAGTGCTACAACCCTGCTGATGAAAACTGCGACTCAAACAATAATGCTCCTTGTCCAGAATCCACTGAACGTAGATGTCAGCATTGTGGAATTAGTGAGAAGTCAACTCCAGCTATGCGTCGAGGACCTGCTGGTCCAAGATCTCTGTGCAATGCATGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTATCTAAATCAGGAAGGATCTCAACTTTTGAACAAAATGAACTGGATTCTTCCACAGATATAAAGCCTTCGACAACAGAACCAGAAAATTCTTGTCCCAACCAAGGTGAAGCGGGAAGCCCAGAGGAGAGCAAGACTGTACAATTAGATTCCAGACAGTCACCGAAGAGGACAAATGGGcagTATATGCTCGAAAATGCCGAAGCAGATAGCAACTTAACCATCCAAGTGGAGAATCCTGCAATGGATCTCCATGATCAGGAGACTCTTGACGATCTCGCGGACGCTTCTGGAACAGAATTTGAGATTCCTGCAGGTTTTGATGAGCAGGTTGACATTGATGATTCCAACATGAGAACTTACTGGCTCTG 1103 0.4515 MDIVNPQPLQARPFDDEELQPVQVPMHVDGVEGGMNAQYVNGGFDEVSNGVEEAKVSSGLSGANDCTAQSRTSELSISFEGEVYVFPAVTPEKVQAVLLLLGGHEMPNIVPSSEFLMQQDMRGINDASRGSKISRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKECYNPADENCDSNNNAPCPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKSGRISTFEQNELDSSTDIKPSTTEPENSCPNQGEAGSPEESKTVQLDSRQSPKRTNGQYMLENAEADSNLTIQVENPAMDLHDQETLDDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00938 367 Pfam tify domain 70 102 IPR010399 -
Bva13g00938 367 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 1 358 - -
Bva13g00938 367 MobiDBLite consensus disorder prediction 253 303 - -
Bva13g00938 367 Gene3D - 198 258 IPR013088 GO:0006355|GO:0008270
Bva13g00938 367 ProSiteProfiles CCT domain profile. 136 178 IPR010402 GO:0005515
Bva13g00938 367 Pfam CCT motif 136 177 IPR010402 GO:0005515
Bva13g00938 367 Pfam GATA zinc finger 205 241 IPR000679 GO:0006355|GO:0043565
Bva13g00938 367 ProSiteProfiles GATA-type zinc finger domain profile. 199 257 IPR000679 GO:0006355|GO:0043565
Bva13g00938 367 SMART GATA_3 199 252 IPR000679 GO:0006355|GO:0043565
Bva13g00938 367 ProSitePatterns GATA-type zinc finger domain. 205 232 IPR000679 GO:0006355|GO:0043565
Bva13g00938 367 PANTHER GATA TRANSCRIPTION FACTOR 28 1 358 IPR045280 GO:0006355
Bva13g00938 367 SMART tify_2 68 103 IPR010399 -
Bva13g00938 367 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Bva13g00938 367 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 255 - -
Bva13g00938 367 CDD ZnF_GATA 204 247 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00938 Bva-Chr13 4411882 4417655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00938 74 248 Tify Gene Family AT1G51600 56.522 1.00e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva13g00938 CCT 5.7e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00938 - - gmx:100785549 462.996