Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00928 ATGGAGCAGGTGTTTGAAAGGTACAATCTGCATTCAGAAGTTCAGAGTCATTCATCTAGAGAGCTGCAGATTGAGAGTGAATCCTACAATAAGCTGCGCAAGGAAGCAGCCGATAAGACCCATGAACTGAGACAGTTAAATGGGGAAGAGCTGCAAGGATGCTCACTGAGAGAATTACAGAAACTAGAGGAACAAATTGAGATGGGTTTGAGACGTGTTTCAAAAGCAAAAgATGAAAGACTCGTGAGAGAGATTAGTGTGCTCAAGAGAAAGGGAGTCCAAATGATGCAAGAGAACCGACAACTGAAACAGAGGGTTGCTTGTGAACAAGGGCAGTCATCTGAGCCAATCACTGTATGCAGCTTACCTGATTCTCCCCAAGACCATGATAGTTCTGATACCTCTCTCAAGCTGGGTTGcccaattataaataaaacaaaaccatCAATGGGTTCGCCACTTTCATTCTATTCATTTTCATGCTTGCGTATCTTGGAGCCATCCAGAGATGGATATCTTGAGTTATTGGTGTGCTTGCCATACGTTGCGATATGCCTATCCATATGTTGTGACATGAGCAGTGATGCAAGATTTACGAAAGAGATTGGCATGCATAGGGTAAAGTTCAGCAGTTCCTCCTCTAAGCAACTGCAGTTCTCACCAACTTTCTCAACTTGGGATATTGCGACTGTTCAAACAAAACGAAAGCGTAATCTTGAAGTGCATTATGAGCAGATTAAGGATTCTGCTGTGTTTATGCCTCAAGCTgaacaaataatttgtttttttaccaTCTatgagaagagagaagagagaatagagaagagagaagagagaagagagaaaactaaactaaaatattcagAAACCCAGCCTATCTTTGTCCTCAACTCGCCTATTGCTGTCAGTCCAGCTAGGAAAATGACGAGAAGAAAGATACAGATCAAGAAGATCGATGACATAACTGCAAGGCAGGTAACTTTCTCTAAGAGGAGGAGAGGGCTTTTCAAGAAGGCCCTGGAGCTGACAACTCTTTGTGATGCTGAGATTGCTCTATTGGTGTTTTCTAACACTGGTAGACTCTTTGAGTATTCCAGTTCAAGTATGCAGGATGTAATTGACAGGTATTGTCTGCAGACAGGGAACCTTGAGAAATTAGATCAGCCATCTGTTGTTCTTGCACATCAGATTGAGTGTTGCAATTATAATGTGCTGAGCAAGGAGGTACAAGAGAAAACTCTAGAACTGAGCAGAATGAAGGGAGAAGAGCTGCAAGGAATGACATTTAAAGAACTACAGAAGCTGGAAGATCTACTTAGCACACGCTTGAACCGTGTTTCAAGAGCAAAGAATGAAATAATTCACAGAGATATCAGTGTCCTTAAGAAAAAGGGAGCCCAGCTATTAGAAGTAAACAAGCAGTTAAAACAGCTTCAGAGGAAACATGAACAAGGTCGCCAGCCATTTGACACCTCTCTCAAGCTGGGGTTACCAATCCCCGACCAAAATCAAAGTTTATCAACTATGAGAGGCATGCAGCAGTA 1544 0.3964 MEQVFERYNLHSEVQSHSSRELQIESESYNKLRKEAADKTHELRQLNGEELQGCSLRELQKLEEQIEMGLRRVSKAKDERLVREISVLKRKGVQMMQENRQLKQRVACEQGQSSEPITVCSLPDSPQDHDSSDTSLKLGCPIINKTKPSMGSPLSFYSFSCLRILEPSRDGYLELLVCLPYVAICLSICCDMSSDARFTKEIGMHRVKFSSSSSKQLQFSPTFSTWDIATVQTKRKRNLEVHYEQIKDSAVFMPQAEQIICFFTIYEKREERIEKREERREKTKLKYSETQPIFVLNSPIAVSPARKMTRRKIQIKKIDDITARQVTFSKRRRGLFKKALELTTLCDAEIALLVFSNTGRLFEYSSSSMQDVIDRYCLQTGNLEKLDQPSVVLAHQIECCNYNVLSKEVQEKTLELSRMKGEELQGMTFKELQKLEDLLSTRLNRVSRAKNEIIHRDISVLKKKGAQLLEVNKQLKQLQRKHEQGRQPFDTSLKLGLPIPDQNQSLSTMRGMQQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00928 514 Coils Coil 266 286 - -
Bva13g00928 514 CDD MADS_MEF2_like 310 376 IPR033896 GO:0000977|GO:0045944
Bva13g00928 514 Coils Coil 29 49 - -
Bva13g00928 514 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 317 364 IPR002100 GO:0003677|GO:0046983
Bva13g00928 514 PRINTS MADS domain signature 330 345 IPR002100 GO:0003677|GO:0046983
Bva13g00928 514 PRINTS MADS domain signature 310 330 IPR002100 GO:0003677|GO:0046983
Bva13g00928 514 PRINTS MADS domain signature 345 366 IPR002100 GO:0003677|GO:0046983
Bva13g00928 514 ProSiteProfiles K-box domain profile. 395 488 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva13g00928 514 Gene3D - 321 388 IPR036879 GO:0003677|GO:0046983
Bva13g00928 514 ProSitePatterns MADS-box domain signature. 310 364 IPR002100 GO:0003677|GO:0046983
Bva13g00928 514 SUPERFAMILY SRF-like 309 380 IPR036879 GO:0003677|GO:0046983
Bva13g00928 514 Coils Coil 59 79 - -
Bva13g00928 514 Coils Coil 461 481 - -
Bva13g00928 514 MobiDBLite consensus disorder prediction 479 514 - -
Bva13g00928 514 ProSiteProfiles K-box domain profile. 22 114 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva13g00928 514 Pfam K-box region 21 106 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva13g00928 514 Pfam K-box region 396 477 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva13g00928 514 PANTHER - 1 141 - -
Bva13g00928 514 PANTHER SERUM RESPONSE FACTOR HOMOLOG 307 485 - -
Bva13g00928 514 Coils Coil 432 452 - -
Bva13g00928 514 ProSiteProfiles MADS-box domain profile. 308 368 IPR002100 GO:0003677|GO:0046983
Bva13g00928 514 PANTHER - 307 485 - -
Bva13g00928 514 MobiDBLite consensus disorder prediction 497 514 - -
Bva13g00928 514 SMART madsneu2 308 367 IPR002100 GO:0003677|GO:0046983
Bva13g00928 514 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00928 Bva-Chr13 4341979 4365346 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00928 308 499 MADS-box Gene Family AT2G22540 53.646 6.62e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva13g00928 K-box 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00928 - - qsu:111985104 203.756