Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00921 ATGGTCCGGTTGGGATGTGATAGAAGAAATCTGAAACAGATATCACATGGTGGATTTGCTctgagaagaagaaggagaaggagagaaGGAGTTCTATCCCATAAACATTGGATATCCATTGGCGAAATGACGAGACAGAAGATACCAATCAAGAAGATCGACAACTTAGCTGCGAGGCAGGTAACTTTCTCTAAGAGAAGGAAAGGGCTCTTCAAGAAGGCTCAGGAGCTTTCAACACTTTGTGATGCTGAAATTGGTCTCATAGTGTTTTCTGCTACTGGCAAGCTCTCAGAATATGCTAGCTCAAGTTTGCAGCAGGTTATTGTGAAGTATAATCTGCATTCAGGCACTAAAAGATTAGATCATCAGTTCATTGAGCAACAGaCTGAGAATGACAACGATAACATGCTGCGCAAGAAAGTAGCAGATCTGACTCGGGAACACAGGCTGTTGAATGGGGAAGGGCTGGAAGCATCAACCATACAAGAATTGCAGAAATTAGAGGAATTACTTGAAAGAGGCTTGAGTCGTGTTTCGAAAGAAAAGGATGAAAGAATAGCAAAACAGATCAGTGAGCTCAAGAGGAGGGAACTCCTGATTATGGAAGAGAATCGACGATTGAAACAGttgcgGAGCACAGTTGCACATGAGCAAGGGCAGTCATCTGAGTCAACCATTATATGCGGCTCATCTTATCCTCTTCAAGACTGTGATAGCTCTAACACCTCTCTCAACCTGGGGTTGTCTTTGTTTaagta 758 0.409 MVRLGCDRRNLKQISHGGFALRRRRRRREGVLSHKHWISIGEMTRQKIPIKKIDNLAARQVTFSKRRKGLFKKAQELSTLCDAEIGLIVFSATGKLSEYASSSLQQVIVKYNLHSGTKRLDHQFIEQQTENDNDNMLRKKVADLTREHRLLNGEGLEASTIQELQKLEELLERGLSRVSKEKDERIAKQISELKRRELLIMEENRRLKQLRSTVAHEQGQSSESTIICGSSYPLQDCDSSNTSLNLGLSLFK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00921 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 52 99 IPR002100 GO:0003677|GO:0046983
Bva13g00921 252 ProSiteProfiles K-box domain profile. 127 222 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva13g00921 252 ProSiteProfiles MADS-box domain profile. 43 103 IPR002100 GO:0003677|GO:0046983
Bva13g00921 252 PANTHER - 42 249 - -
Bva13g00921 252 ProSitePatterns MADS-box domain signature. 45 99 IPR002100 GO:0003677|GO:0046983
Bva13g00921 252 PRINTS MADS domain signature 65 80 IPR002100 GO:0003677|GO:0046983
Bva13g00921 252 PRINTS MADS domain signature 80 101 IPR002100 GO:0003677|GO:0046983
Bva13g00921 252 PRINTS MADS domain signature 45 65 IPR002100 GO:0003677|GO:0046983
Bva13g00921 252 SMART madsneu2 43 102 IPR002100 GO:0003677|GO:0046983
Bva13g00921 252 Gene3D - 57 140 IPR036879 GO:0003677|GO:0046983
Bva13g00921 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 42 249 - -
Bva13g00921 252 SUPERFAMILY SRF-like 43 122 IPR036879 GO:0003677|GO:0046983
Bva13g00921 252 CDD MADS_MEF2_like 45 116 IPR033896 GO:0000977|GO:0045944
Bva13g00921 252 Coils Coil 200 220 - -
Bva13g00921 252 Coils Coil 161 184 - -
Bva13g00921 252 Pfam K-box region 126 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00921 Bva-Chr13 4270101 4277789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00921 43 248 MADS-box Gene Family AT2G22540 43.882 4.09e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva13g00921 K-box 2.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00921 - - aprc:113860188 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00921 13 4270101 4277789 Bva14g01095 14 5225850 5231225 BWGD
Bva13g00921 13 4270101 4277789 Bva13g00921 13 4270101 4277789 ECH