Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00895 ATGTCTGAGCTTGAAGCTTCCCGctcagagaagaagaagaagaagaagcaccGCAGCAAAGATGAAAACGAAGACACTTCCGCCAATGCTCTTGCTCTTGCGGACTCCGACCCGACTCAGAAGGACTCCAATTTTATGATCAAACCGCAGAGCTTCACTCCTCCAATTGACACCTCTCAATGGCCAATTCTCCTCAAGAACTATGACCGCCTCAACGTACGAACGGGACACTACACTCCAATCCCCGCTGGTTACTCTCCCCTGAAGCGCCCTCTCCCAGAGTACATCAAATACGGTGTTATGAATCTGGATAAACCCGCGAACCCTTCTTCTCACGAGGTCGTAGCTTGGATCAAACGAATCCTCCGGGTCGAGAAAACAGGTCATAGTGGCACTCTGGACCCGAAAGTCACCGGGAACCTTATTGTTTGCATTGACAGGGCGACCCGGTTGGTGAAATCGCAACAGGGTGCTGGGAAAGAGTATGTCTGTGTTGCCCGGTTGCACTCTGCGGTGCCAGATGTTGCAAAGGTGGCGCGTGCGCTTGAAACGCTTACTGGGGCTGTGTTTCAGAGGCCGCCATTGATTTCTGCGGTGAAGAGGCAGCTCAGGATCAGGACTATATATGAAAGTAAGCTTCTTGAGTATGACCCAGACAGGCATTTAGTTGTGTTTTGGATATCCTGTGAAGCAGGTACCTATGTTAGGACTATGTGTGTTCATTTGGGTTTAATTCTGGGTGTGGGAGGGCATATGCAGGAGCTTAGGAGGGTACGTTCTGGTATTATGGGTGAGAAAGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTACAGGGATGAGAGTTATTTGAGGAGGGTTGTTATGCCATTAGAAGTGGTTTTGACAAGTTATAAGAGATTGGTTGTAAAAGATTCATCTGTGAATGCTATTTGCTATGGAGCTAAGCTTATGATTCCTGGGTTGTTGAGGTTTGAGAATGACATTGAGGTTGGGGAGGAAGTTGTGCTTATGACTACGAAAGGTGAGGCAATTGCCTTGGGGATTGCTGAGATGACTACTGCAGTTATGGCGACTTGTGATCATGGTGTGGTGGCTAAGATTAAAAGGGTGGTGATGGATCGAGATACGTATCCAAGGAAATGGGGCTTAGGTCCAAGGGCTTCCACGAAGAAGAAGCTGATTGCAGAAGGGAAGCTTGATAAGCATGGCAAGCCAAATGAGAATACTCCTCAAGAGTGGCTGAGGAATCTAGTTTTACCCACTGGTGGAGATAAAATGATTGCAGGAATGGCTGCTGCAGTGAAAACAGATCCAGTGAAGGAGGCTGTTgtagaagagaaggaaaagaccAAGGAGGAGAAAGATGAGGAGGGGCGTAAAAGGAAGAAGGTTGAAAGCAGTGATAGCCCTGCAGCTCCTCCTGCTAAGAAAGTGAGAGTTGAAGAGGTTGAGAGGGAGGAAAGGGTGAAGGTtaagaagggaaaagaagagGCTGTAGAGTTTGAAGtcgagaagaaagagaagaagaagaaaaagaaaaaagataaacagaaCGAAGTAGCATCTTCGGATGAGGAAAAAacagagaaggagaagaaaaagaagcacaaagagaaagaaaaggttgAAGCTGGTTCACCTAATGCTGAGAAGtctgagaagaagaaaaagaaaaaggaggacAAAGAGGGTGAAACCGATGCTACTGAGATCAGaactgaaaaggaaaatggtgATGCTGATAGGagtgagaagaaaaaacataagaagaagaaaagtaaagatGTTGAGGAAAATATCTG 1826 0.4091 MSELEASRSEKKKKKKHRSKDENEDTSANALALADSDPTQKDSNFMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPAGYSPLKRPLPEYIKYGVMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVVMPLEVVLTSYKRLVVKDSSVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASTKKKLIAEGKLDKHGKPNENTPQEWLRNLVLPTGGDKMIAGMAAAVKTDPVKEAVVEEKEKTKEEKDEEGRKRKKVESSDSPAAPPAKKVRVEEVEREERVKVKKGKEEAVEFEVEKKEKKKKKKKDKQNEVASSDEEKTEKEKKKKHKEKEKVEAGSPNAEKSEKKKKKKEDKEGETDATEIRTEKENGDADRSEKKKHKKKKSKDVEENI 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00895 608 Gene3D Pseudouridine synthase 91 297 - -
Bva13g00895 608 Coils Coil 594 608 - -
Bva13g00895 608 SUPERFAMILY Pseudouridine synthase 58 303 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva13g00895 608 Coils Coil 499 548 - -
Bva13g00895 608 MobiDBLite consensus disorder prediction 29 43 - -
Bva13g00895 608 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 5 607 - -
Bva13g00895 608 TIGRFAM CBF5: putative rRNA pseudouridine synthase 65 390 IPR004802 GO:0006396
Bva13g00895 608 MobiDBLite consensus disorder prediction 1 43 - -
Bva13g00895 608 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 5 607 IPR004802 GO:0006396
Bva13g00895 608 SUPERFAMILY PUA domain-like 305 386 IPR015947 -
Bva13g00895 608 SMART pua_5 306 380 IPR002478 GO:0003723
Bva13g00895 608 Pfam tRNA pseudouridylate synthase B C-terminal domain 236 302 IPR032819 -
Bva13g00895 608 Pfam PUA domain 306 378 IPR002478 GO:0003723
Bva13g00895 608 Gene3D PUA domain 58 389 IPR036974 GO:0003723
Bva13g00895 608 Coils Coil 448 475 - -
Bva13g00895 608 Pfam DKCLD (NUC011) domain 58 115 IPR012960 -
Bva13g00895 608 MobiDBLite consensus disorder prediction 483 592 - -
Bva13g00895 608 TIGRFAM unchar_dom_2: uncharacterized domain 2 301 377 IPR004521 GO:0003723
Bva13g00895 608 ProSiteProfiles PUA domain profile. 305 380 - -
Bva13g00895 608 Pfam TruB family pseudouridylate synthase (N terminal domain) 119 235 IPR002501 GO:0006396
Bva13g00895 608 SMART DKCLD_2 57 115 IPR012960 -
Bva13g00895 608 MobiDBLite consensus disorder prediction 450 475 - -
Bva13g00895 608 CDD PseudoU_synth_hDyskerin 97 279 - -
Bva13g00895 608 MobiDBLite consensus disorder prediction 450 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00895 Bva-Chr13 4181906 4183919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00895 1 576 NAC Transcription Factor Family AT3G57150 71.626 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00895 K11131 - jre:108999000 805.823