Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00894 ATGGGACATCCCAGAAGGTTGATGTCAGAAGAACCTTGCAAAACAATTTGTTACATAACAAAGTGTTCCCCAGCTTGTGGTCATTTCTGCATCAATAGCTGCTCAATCGATTCTTTTCCTCCATCTCCTCCTTTCATCATAGATGTAATTGAACCGGCTCATAATTCCAGCAAAACCCACCACAAAATTTCAACTGCTTTAATCATCACCCTCACTCTTCTCTCtgctgctttctttcttttctgctgCTATGCCCTCTATGTCAAGTTCCTCTCGGCTCGGTTAGGTTCGAGGAGAAGATCACAGCCTCAAACAGAAGAAACCCTCGATGATTTTCTTGATGAAGAACATGGCCCTGTGGTGGACCATCCCATATGGTATATCCGCACCCCTGGTCTTCAGGAATCAATCATCACTGCCATCACGGTTTGCAAATATAAGAGAGGTGAGGGTTTGATTGAAGGAACAGAATGCTCTGTTTGCTTGAGTGAATTTGAAGAGGATGAGGCTCTTAGGCTTTTGCCCAAGTGTAATCATGCTTTTCATCTCCCTTGTATTGATACTTGGCTTCGATCACACACCAATTGCCCTATGTGTCGCGCTCCTATAGTCACCAACACAGCAAGAACACCATCCGAGGACCCTAATCCTGTTGATTCAAGCTCTATGGGAAATACCCAGATGGAAATTGTGATAGATAATGGTGAAAACAGCGCGAGGATTGAAAGTTCTGTTCCTGAATTGAGGGTTGGAGAAGAGGAGGAAGCTCAATTGGAAAGTACTGAAGAAGATAGCAGAAGGGTATTTGAAGGTGGAAGCTCAAGTGCTGAAGGGGAGGACTTGCAACCAAGGAGAAGATCAATTTCCTTGGATTCTTCTTTTGCTGCAAAGATCAATCTTGCTCTTGCTACTTTCCGTCCAGCTGAGGGATCTTCTGGTAATTCGAGTGGGCAACTGGGGCAAGTAAACGGAGCAATTGTGTCAAAGAGGATTACAAAGGGAAGTTCTTCTTTTAGAGCAAGGTATCTGCAGAGTGCACCTACGACAATGAAGAGGTCACGTTCCTTCAACGGAAAACACTTGCTATCCTGGTATAACCGCAGTCACAAGAAGCCAAATGCTCCCATAAGAAGCTTTTA 1139 0.4346 MGHPRRLMSEEPCKTICYITKCSPACGHFCINSCSIDSFPPSPPFIIDVIEPAHNSSKTHHKISTALIITLTLLSAAFFLFCCYALYVKFLSARLGSRRRSQPQTEETLDDFLDEEHGPVVDHPIWYIRTPGLQESIITAITVCKYKRGEGLIEGTECSVCLSEFEEDEALRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTNTARTPSEDPNPVDSSSMGNTQMEIVIDNGENSARIESSVPELRVGEEEEAQLESTEEDSRRVFEGGSSSAEGEDLQPRRRSISLDSSFAAKINLALATFRPAEGSSGNSSGQLGQVNGAIVSKRITKGSSSFRARYLQSAPTTMKRSRSFNGKHLLSWYNRSHKKPNAPIRSF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00894 379 MobiDBLite consensus disorder prediction 246 270 - -
Bva13g00894 379 SMART ring_2 158 199 IPR001841 -
Bva13g00894 379 MobiDBLite consensus disorder prediction 243 285 - -
Bva13g00894 379 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Bva13g00894 379 SUPERFAMILY RING/U-box 152 208 - -
Bva13g00894 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 208 IPR013083 -
Bva13g00894 379 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 366 IPR044675 -
Bva13g00894 379 PANTHER RING-H2 FINGER PROTEIN ATL54-LIKE 10 366 - -
Bva13g00894 379 SMART FANCL_C_2 154 208 - -
Bva13g00894 379 CDD RING-H2_PA-TM-RING 157 200 - -
Bva13g00894 379 Pfam Ring finger domain 157 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00894 Bva-Chr13 4179001 4180510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00894 49 211 C3H Transcription Factor Family AT1G72220 52.410 2.15e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00894 - - mtr:MTR_4g093830 335.109