Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00889 ATGCACGGCGGCGGTAATGGCACACTCAGAGTCGCTGATCAAAGTTACTGGAACAAGCCTATGGCTAGTTACCTCATACGCTACCACTCCAACCAGCTCCGCTCTATCGTCTTTGCTCCAGATTCCAAGCTTCATTACTCTCTATACGTCGATTATGCAGAGTTAATGGAGTATGATCCTCGCCTCGCCCACCTCATCTTTACCGAACCCATGAAGTACTTAGAGCAATTTGACGAGGCTGCTATCTGGGCCAATAAAATCATATTGGGAGAATTAGGAGATAACGAGAAAGGGGTTgagaaaaaattcattcatGTCCGCATAAATGTCAGTGGGTCTCCGCTTGAATGCCCTGAGACTAATCCAAGCATAGGACGAGTTAGAGTGAAGCATCGTGGAATTCTTCTTACCCTCAAAGGGACAGTAATCAGATCAGGATCCATAAAGATGCATGAAGGAGAGAGGTTATACATGTGCGAAAAGTGCCACAATAGCTTTACAGTCTATCCTGAGTTGGAAGCTCGAAATTCCATAACGCCACCTTCAGTTTGCCCAGTTCGGGGATCTAAGCCCTGTGGAGGCAAAAAGTTTCAGTACGTAGATAATTCTATAGTATGCCATGATTatcaagagataaaaatacaagaaagtACGCAGGTCCTGGGTGTTGGGGCAATTCCTCGTTCGATTATTGTTATCTTGAAGGATGACCTTGTTGACATGGTTAAAGCTGGAgATGATGTAGTCGTCACTGGAATTTTAACAGCAAAATGGTCTCCAGAGTTGAATAGCGTGCGGTGTGACCTTGATCCCGTATTAGTAGCCAATCATGTAAGGAGAACCAATGAACTGAAGTCGGAAATTGATATTCCTGATGATATTGTTACAAAATTCAAACAGTTTTGGATCAACTTCAAAGATGAGCCACTAAAAGGGAGGAATGCCATTCTACGAGGAATTTGCCCACAAGTATTTGGACTCTTCACTGTCAAGCTGGCAGTTGCATTGACACTTATTGGAGGAGTGCAACATGTTGATGCTTCTGGAACAAAGGTGCGAGGGGAGTCCCACTTACTCTTGGTCGGTGATCCTGGCACTGGAAAATCTCagtttttgaaatttgctGCAAAATTGAGCAATCGCTCTGTTATTACCACTGGTTTGGGAAGCACAAGTGCTGGATTGACAGTTACTGCAGTGAAGGATGGAGGGGAGTGGATGTTGGAAGCTGGGGCACTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGAGCACATGATAGAGCAACCATACATGAAGCTATGGAGCAACAGACCATAAGTGTTGCCAAGGCTGGTCTTGTAACAACTCTCAGCACTAAAACTACCGTATTTGGTGCCACAAATCCTAAGGGACATTATGATCCTGAACAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTCTAATAAGCAGATTTGATATAGTCCTTGTGCTCTTGGATACAAAGAACCCTGAATGGGATGCAGTAGTTTCGTCTCATATTCTTTCTGAGGCTGAACCAGACAGAAACAGGAATGATGATGATCTAGCAAACACCTGGCCTGTTTCTACGCTCAAGAGGTATATTCACTTTCTGAAAGAAAACTTCAGACCAGTCCTTACGAGAGAGGCTGAAATTGTTATCTCGAGCTACTATCAACTTCAGAGGAAATCTGCCACTCATAATGCAGCTAGGACAACTGTTCGCATGCTGGAAAGTTTGATACGCCTAGCCCAAGCTCATGCGAGGCTTATGTTCAGAAATGAGGTCACTCTAGTAGATGCCATCACAGCTATTTTATGCATAGAATCCTCGATGACTACCTCAGCTATAGTGGATTGCATTGGAAATGCTCTGCATTCCAATTTTACTGAAAACCCTGATCAGGAATATGCCAAGCAAGAAAGGTTGATCCTACAAAAATTGGGATCAATAGATGAACTATCTGATATAAACAGCATGGAACACTG 2012 0.4259 MHGGGNGTLRVADQSYWNKPMASYLIRYHSNQLRSIVFAPDSKLHYSLYVDYAELMEYDPRLAHLIFTEPMKYLEQFDEAAIWANKIILGELGDNEKGVEKKFIHVRINVSGSPLECPETNPSIGRVRVKHRGILLTLKGTVIRSGSIKMHEGERLYMCEKCHNSFTVYPELEARNSITPPSVCPVRGSKPCGGKKFQYVDNSIVCHDYQEIKIQESTQVLGVGAIPRSIIVILKDDLVDMVKAGDDVVVTGILTAKWSPELNSVRCDLDPVLVANHVRRTNELKSEIDIPDDIVTKFKQFWINFKDEPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRAHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPEQPLSVNTTLSGPLISRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRNRNDDDLANTWPVSTLKRYIHFLKENFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTLVDAITAILCIESSMTTSAIVDCIGNALHSNFTENPDQEYAKQERLILQKLGSIDELSDINSMEH 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00889 670 Pfam MCM AAA-lid domain 538 619 IPR041562 -
Bva13g00889 670 Gene3D - 127 256 IPR012340 -
Bva13g00889 670 Pfam MCM OB domain 127 255 IPR033762 -
Bva13g00889 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 629 IPR027417 -
Bva13g00889 670 SUPERFAMILY Nucleic acid-binding proteins 45 267 IPR012340 -
Bva13g00889 670 SMART AAA_5 354 503 IPR003593 -
Bva13g00889 670 CDD MCM9 315 619 - -
Bva13g00889 670 PANTHER DNA HELICASE MCM9 42 658 - -
Bva13g00889 670 SMART mcm 120 621 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bva13g00889 670 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 42 658 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bva13g00889 670 Gene3D - 10 110 - -
Bva13g00889 670 Gene3D - 295 625 IPR027417 -
Bva13g00889 670 Pfam MCM P-loop domain 314 517 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva13g00889 670 Gene3D - 151 207 - -
Bva13g00889 670 PRINTS Mini-chromosome maintenance (MCM) protein family signature 411 425 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva13g00889 670 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 452 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva13g00889 670 PRINTS Mini-chromosome maintenance (MCM) protein family signature 489 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva13g00889 670 PRINTS Mini-chromosome maintenance (MCM) protein family signature 353 368 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva13g00889 670 ProSiteProfiles MCM family domain profile. 312 515 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00889 Bva-Chr13 4156104 4163060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00889 21 644 Core DNA Replication Machinery Family AT2G14050 75.598 0.0 992
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00889 K10738 - gmx:100776255 1110.9