Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00887 ATGAAGTTCAACATTGCTAATCCCACCACTGGGTGCCAGAAGAAGCTGGAGATCGATGACGATCAGAAACTTCGAGCATTTTGGGATAAGCGGATTTCCCAGGAAGTTATCGGTGACGCATTGGGTGAGGAATTTAAGGGCTATGTCTTCAAGATCACCGGAGGGTGTGACAAGCAAGGATTTCCAATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGTCTCTTGCTGCACAGAGGAACTCCATGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGGTGCATTGTTAGCCCAGACCTCTCTGTTCTTAACTTGGTTATAGTGAAGAAGGGTGAAAGTGACTTACCAGGCCTGACAGACATTGAAAAGCCAAGGATGAGAGGTCCAAAGAGAGCATCTAAAATTCGTAAACTGTTCAACCTTTCAAAGGAGGATGATGTAAGGAAGTATGTCAACACTTACCGCCGAACCTTTACTACAAAGAACGGGAAAAAGGTGAGCAAGGCTCCAAAGATACAAAGATTGGTCACTCCTTTGACTCTCCAAAGAAAGCGTGCAAGGATTTCagataagaaaaagagaattgcTAAGGCCAAGTCCGAGGCAGCGGAGTACCAGAAACTTCTGGCATCCAGGTTGAAGGAGCAGAGGGAACGCCGCAGCGAGAGTTTGGCAAAGAGGAGATCCAAGCTCTCCAGTGCTTCCAAGCCATCTGTTGCTGCATA 749 0.4686 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVIGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARISDKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSASKPSVAA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00887 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 IPR001377 GO:0003735|GO:0005840|GO:0006412
Bva13g00887 249 MobiDBLite consensus disorder prediction 221 237 - -
Bva13g00887 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Bva13g00887 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 - -
Bva13g00887 249 Gene3D - 133 234 - -
Bva13g00887 249 MobiDBLite consensus disorder prediction 221 249 - -
Bva13g00887 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Bva13g00887 249 Coils Coil 189 216 - -
Bva13g00887 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Bva13g00887 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00887 Bva-Chr13 4148128 4150584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00887 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.888 4.47e-120 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00887 K02991 - gmx:100786559 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00887 13 4148128 4150584 Bva13g00887 13 4148128 4150584 ECH