Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00881 ATGGAAAACGACGACGTTGATATGCAGGGAGaagagaccaacgaaGAATTGGATGACATGAAGAAGCGGTTGAAAGAAATGGAGGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAGATGGGATCTGTACAAGATCCTGCTACTGCTTCTTCAAGCCAGGTCAATAGAGAGGAAGTAGACACCCGATCAATCTTCGTAGGCAATGTAGATTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTCCAATCGTGTGGAACAGTAAACAGAGTTACCATTCGGACAGACAAGTATGGTCAACCCAAGGGTTATGCTTATGTGGAGTTCCTTGAAGTAGAAGCTGTTCAAGAGGCTCTCCTACTGAATGAATCTGAACTGCACGGGCGCCAATTGAAGATAACCACAAAGCGGACCAATATACCTGGAATGAAGCAGTATCGACCCCGCCGGTCCAATCCTAACATGGGGTTCCGAGGCAGAGCCCCATTTGCAGCTCCTTTTGTCTATTCTCCCAATGGATATGGAAAGGTTCCAAGGTTCCGAGCGCCAATAATGCGTTACAGCCCCTACTATTG 590 0.4644 MENDDVDMQGEETNEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATASSSQVNREEVDTRSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKYGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKITTKRTNIPGMKQYRPRRSNPNMGFRGRAPFAAPFVYSPNGYGKVPRFRAPIMRYSPYY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00881 196 Coils Coil 3 44 - -
Bva13g00881 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
Bva13g00881 196 SMART rrm1_1 68 139 IPR000504 GO:0003723
Bva13g00881 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 188 - -
Bva13g00881 196 CDD RRM_II_PABPs 68 139 - -
Bva13g00881 196 MobiDBLite consensus disorder prediction 1 22 - -
Bva13g00881 196 Gene3D - 1 149 IPR012677 -
Bva13g00881 196 SUPERFAMILY RNA-binding domain, RBD 54 165 IPR035979 GO:0003676
Bva13g00881 196 MobiDBLite consensus disorder prediction 42 61 - -
Bva13g00881 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 143 IPR000504 GO:0003723
Bva13g00881 196 PANTHER - 4 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00881 Bva-Chr13 4116252 4120535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00881 68 138 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 5.25e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00881 K14396 - gmx:100784473 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00881 13 4116252 4120535 Bva14g01055 14 5056616 5059582 BWGD
Bva13g00881 13 4116252 4120535 Bva13g00881 13 4116252 4120535 ECH