Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00875 ATGTTGAGCGTAGGGAACAGTACACCGCCGTCAGCGCCACCACAGGGTCTGAAATTGGAGTCCTTAGCTAGCATAGACACCACTACGCTTTCCCAGTCTGAGCTCCAAGCGCTTTCTCTCTGCTCACTCTCCGCTTTCGACCTTCGCTCCACCCATGAACTTGTCACCCCCAAAATCGATCGTGCGCTCTTCAACGAAAGCGCTGGCTCCCGTCGCCAGACCTACTCTCGACCCCGTAGGCAGCAATCCGCCGCCGGTTCTCCCACCGGCCACCGCCGTCGCGTTGCCGGGCTTCTTCCCACTCCGAAGCTGCCTCCCGTCCCTGCTGGTGACCCGGAAAACGTAGAAAATCGGATGATTATCGATTATCTGAAACAATTAATCAGGGAAGATCCAAACTTTGATCAAGTTGAGCTGGCCCCACCTTCTGTTTCCACCGTTAGTGAAACAGTTTTGGAATCTAGGGATGAAATAGTGACCAGACCGGAAGTGGATATGGTGAATTTTGGcggagaaaggaaaaggaaaaggggaaGGAAACCAAAAGTGAAAGTGCATTTGGAGGAGTGCTATAGGGGAAGGGAAGTTGTGAATAAGAATGGCGTTGCCATTGATCTTTCCGATCTGGCTTATGCGGAGGATCCCTTTGCTGAGGAGTTGAGGAGAAGAACTGTGGGCTtgcagaaagaagaagaattattgGGTTTTCTGAGGGATTTGGGTGGACAATGGGGTAGtaggaggaagaagaggaagattgTGGATGCAGGAGATTTCGGAGACGTGTTGCCAGTTGGTTGGAAGCTTCTACTTGGTTTGAAGAGGAAAGATGGTCGTGCATGGATTTATTGCCGTAGATACATAAGTCCTAATGGACAACAATTTGTTACTTGCCGAGAAGTTTCTTCATATTTGCAGTCTGTTTTTGGTTACAATGATGCGCAATGGGCTATCAACCGTAGGGGTGAAAATATGATGCAGGACAATAGAGTGGCTACTGAAAGCCATGCAGGTGTTACCCACGATAATCAAGAACGAAGGCAGCTTGTTGCATCCAACCCAAGTCTACCCAGTTCTTCTGTATCTAATGAACGTATGAAGGAAGTGGCATCGTTGGGGATTGATAGCCTTGCTGATTTGCAAACACATGACCTATTTGAATGTCACAAATGCAACATGACCTTCGATGAGAAGGATTCATACTTGCAGCACCTGCTGTCTTTTCACCAAAAGCCAACAAGGCGGTATCGACTTGGTTCTTCTGTTGGAGATGGAGTCATAATTAAAGATGGAAAATTTGAGTGCCAGTTTTGCCATAAGGTTTTTCAAGAGAGGCGTCGCTATAATGGTCATGTTGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGAATCACCAGCTCAGGCAAGTGTAAAAAGGAGAGATAAGTCTCCAATTAGGGAGGATATGCCTATGAGGATCTCTAAGATGGATGCTCTAATTGAAATAGCTCAGAACTCTATTATGGAGAACTCAAACTTGGATCCTCATAGTAAAAGCAACCCCGCCTCAGAACTTGCTGTTGGCAATTTAGATGATGACATAAACATTGAGTCTCCTCTCAGTGAACAACCAATAGAAGATAGCTTGACTGATAAAAATGTGTGTCAGGATTTGAATCAACATGCACACATGGATGGAAAAACTGATGATTTTGATCAGTCAGGGGTTGATCTTGAAGGAGTTTCTCGCAGTCCTTTACTTCCTTTATCTGGAAAGCATGCAACACCTGAAGCTGAGAGTAGCAAAACTTATGGATCCATTAATGCTGAGGGGCAATTTAAGCCCAATGAAGGTGACAGTAACATGACTGAGCTGAAAATTGGTTTAGGTGGCAACATTGATGCATCTGTTAGCAATAATGCCATATA 1913 0.4401 MLSVGNSTPPSAPPQGLKLESLASIDTTTLSQSELQALSLCSLSAFDLRSTHELVTPKIDRALFNESAGSRRQTYSRPRRQQSAAGSPTGHRRRVAGLLPTPKLPPVPAGDPENVENRMIIDYLKQLIREDPNFDQVELAPPSVSTVSETVLESRDEIVTRPEVDMVNFGGERKRKRGRKPKVKVHLEECYRGREVVNKNGVAIDLSDLAYAEDPFAEELRRRTVGLQKEEELLGFLRDLGGQWGSRRKKRKIVDAGDFGDVLPVGWKLLLGLKRKDGRAWIYCRRYISPNGQQFVTCREVSSYLQSVFGYNDAQWAINRRGENMMQDNRVATESHAGVTHDNQERRQLVASNPSLPSSSVSNERMKEVASLGIDSLADLQTHDLFECHKCNMTFDEKDSYLQHLLSFHQKPTRRYRLGSSVGDGVIIKDGKFECQFCHKVFQERRRYNGHVGIHVRNYVRKVEESPAQASVKRRDKSPIREDMPMRISKMDALIEIAQNSIMENSNLDPHSKSNPASELAVGNLDDDINIESPLSEQPIEDSLTDKNVCQDLNQHAHMDGKTDDFDQSGVDLEGVSRSPLLPLSGKHATPEAESSKTYGSINAEGQFKPNEGDSNMTELKIGLGGNIDASVSNNAI 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00875 637 ProSitePatterns Zinc finger C2H2 type domain signature. 435 455 IPR013087 -
Bva13g00875 637 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 253 325 IPR001739 GO:0003677
Bva13g00875 637 MobiDBLite consensus disorder prediction 67 88 - -
Bva13g00875 637 MobiDBLite consensus disorder prediction 591 614 - -
Bva13g00875 637 ProSitePatterns Zinc finger C2H2 type domain signature. 388 409 IPR013087 -
Bva13g00875 637 ProSiteProfiles Zinc finger C2H2 type domain profile. 433 460 IPR013087 -
Bva13g00875 637 Gene3D Classic Zinc Finger 359 461 - -
Bva13g00875 637 SMART c2h2final6 386 409 IPR013087 -
Bva13g00875 637 SMART c2h2final6 433 455 IPR013087 -
Bva13g00875 637 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 17 557 IPR037472 -
Bva13g00875 637 ProSiteProfiles Zinc finger C2H2 type domain profile. 386 414 IPR013087 -
Bva13g00875 637 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 17 557 - -
Bva13g00875 637 MobiDBLite consensus disorder prediction 65 113 - -
Bva13g00875 637 SUPERFAMILY DNA-binding domain 261 318 IPR016177 GO:0003677
Bva13g00875 637 MobiDBLite consensus disorder prediction 558 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00875 Bva-Chr13 4088382 4091422 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva13g00875 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00875 - - adu:107468625 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00875 13 4088382 4091422 Bva13g00875 13 4088382 4091422 ECH