Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00864 ATGTCTCACTTTGGAAGGTCAGGTCCCCCGGATATTTCAGACACATACTCTCTTCTCGTATTGAACATCACATTCCGTACCACCGCTGATGACCTATTTCCACTGTTTGATAAGTATGGCAAGGTCGTCGACATCTTCATCCCCAAAGATCGAAGGACTGGTGAGTCAAGGGGTTTTGCATTTGTGCGCTACAAATATGCAGATGAAGCATCAAAAGCCGTGGAAAAGCTGGATGGAAGAGTTGTTGATGGTAGAGAAATAACTGTCCAGTTTGCAAAATACGGGCCAAATGCTGAAAGGATCCACAAGGGAAGGATTAGCGAACCATTACCAAAATCCAGGTACAGGTCAAGGAGCCGAAGTCCCAGGCGAAGGCACCGTGATGATTACAGAGACCGGGACCAGAGGAGGAGAAGTCACAGTAGAAGTTATGATAGGTATGAACGGGACAGGTACCGTGGGAGAGACAGAGGTTATCGTCGGCGAAGCAGAAGCCGTAGTGCCAGTCCTGATTACCACAGGAGCCGTGGGAGGGGCCgctatgatgatgatgagatACGCAGTCGAAGCAGAAGTCGATCAGTGGATAGCCGCTCTCCTGCACGGCGTAGTCCTAGTCCCCGAAGGAGTCCTTCCCCACGGAGGAGCCCTTCCCCCAAAAGAAGCATTTCCCCACAAAAGAGTCCTAAGGTTGAAAGCCCTGAGAGCCAGAGCCGGGATGGAAGGTCGCCTACACCCCGCAGTGTCTCACCACGCAGTCGACTTCCCCGCAATGTCTCACCACACAGTCGACCTCGTCATTCACGAAGCCCATCCCCTCGAAATTCAGATGTTGATGAATG 842 0.5071 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVEKLDGRVVDGREITVQFAKYGPNAERIHKGRISEPLPKSRYRSRSRSPRRRHRDDYRDRDQRRRSHSRSYDRYERDRYRGRDRGYRRRSRSRSASPDYHRSRGRGRYDDDEIRSRSRSRSVDSRSPARRSPSPRRSPSPRRSPSPKRSISPQKSPKVESPESQSRDGRSPTPRSVSPRSRLPRNVSPHSRPRHSRSPSPRNSDVDE 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00864 280 MobiDBLite consensus disorder prediction 163 198 - -
Bva13g00864 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Bva13g00864 280 Gene3D - 4 103 IPR012677 -
Bva13g00864 280 SMART rrm2_1 17 90 IPR003954 GO:0003676
Bva13g00864 280 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Bva13g00864 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Bva13g00864 280 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35-LIKE 1 276 - -
Bva13g00864 280 MobiDBLite consensus disorder prediction 125 155 - -
Bva13g00864 280 MobiDBLite consensus disorder prediction 100 115 - -
Bva13g00864 280 MobiDBLite consensus disorder prediction 216 257 - -
Bva13g00864 280 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 276 - -
Bva13g00864 280 SMART rrm1_1 17 90 IPR000504 GO:0003723
Bva13g00864 280 MobiDBLite consensus disorder prediction 100 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00864 Bva-Chr13 4034620 4038937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00864 17 89 Eukaryotic Initiation Factors Gene Family AT4G34110 41.096 1.15e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00864 K12891 - pvy:116113546 269.24