Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00828 ATGGTTTTTCTGAAACTGAATTTGATGAAGAGCGAGCGTTCACCGGAGAAGCAACGAAGCAAGGTTATCCTCCAACGCTACGGAAAGCCGCAACCTTTCTGCGATCAATTCCTCGCGTCACTTTTTGAGATGTCAGAATTGGAAGAATATCGTTGTTTTATTGGTGGCCTCTCATGGTCAACATCTGATAGACAGTTAAGAGATGCATTTGAAAAGTTTGGCAAGCTTGTTGAAGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGTTCTCGTGGCTTTGGATTTGTCACATTTgatgaaaagaaagcaatgGAAGATGCTATTGAGGCTATGAATGGGATGGACTTAGATGGTCGATCTATTACTGTTGATAAAGCTCAGCCTCAACAAGGATCAAGTAGAGATGATGGTGATCGCTTCCGAGATCGTGGTCGTGATCGTGATCGTAGCAGAAGTTTTGGAGGTGGAAGAGGGTCTAACGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGCCATTTTGCTCGTGAGTGTCCCAGCGAAGGTGGAAAAGGGGGCAGGTATGGTGGCAGGGATAGTAGATATGGTGGCAGtggaggtggtggtggtggtcaCTATGGTCCTGATAGGAATGCAGAACGTCCCTCTGGTGGACGCAACAGGGATTCTGGAAGTCACGGAGATTCTGGGGGTGATCGATATTCTCGTGACCGTGCTGGACCCTATGACCGACGGGGATCAGGAGGCTTTCGTTCTGGCTTTGGAACTGGTGGGGTTGCTGTTACCACCTCAGCTGTCCTTCTCAATGACCATGTTCTGGAATTGTTGTTTAGATGGATCAATGAAGATCTTCGAGTAGAAAGTAGTCAAACGGCTGCAACAAGCCATCTGCAATTACTCTTCTTATTTTCTGCACGGGGAAATGATGGAAAGGTTACATTTTGCATTCATTGTGGCCGCTATTTGGAAGCTCTTGATGAGTTGAGCTACTGCGGCACATGCTTTTTTGCAGTTCCTGTTCTTTTTGGTGGAAGATTGCTCTGCTCAAACTTTTTCCTTGTCTGCATGTG 1067 0.447 MVFLKLNLMKSERSPEKQRSKVILQRYGKPQPFCDQFLASLFEMSELEEYRCFIGGLSWSTSDRQLRDAFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIEAMNGMDLDGRSITVDKAQPQQGSSRDDGDRFRDRGRDRDRSRSFGGGRGSNGGECFKCGKPGHFARECPSEGGKGGRYGGRDSRYGGSGGGGGGHYGPDRNAERPSGGRNRDSGSHGDSGGDRYSRDRAGPYDRRGSGGFRSGFGTGGVAVTTSAVLLNDHVLELLFRWINEDLRVESSQTAATSHLQLLFLFSARGNDGKVTFCIHCGRYLEALDELSYCGTCFFAVPVLFGGRLLCSNFFLVCM 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00828 355 MobiDBLite consensus disorder prediction 211 243 - -
Bva13g00828 355 ProSiteProfiles Zinc finger CCHC-type profile. 164 179 IPR001878 GO:0003676|GO:0008270
Bva13g00828 355 SUPERFAMILY Retrovirus zinc finger-like domains 146 184 IPR036875 GO:0003676|GO:0008270
Bva13g00828 355 SMART c2hcfinal6 163 179 IPR001878 GO:0003676|GO:0008270
Bva13g00828 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Bva13g00828 355 Gene3D - 160 220 - -
Bva13g00828 355 SMART rrm1_1 51 124 IPR000504 GO:0003723
Bva13g00828 355 MobiDBLite consensus disorder prediction 175 248 - -
Bva13g00828 355 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 44 212 - -
Bva13g00828 355 PANTHER TRANSFORMER-2-RELATED 44 212 - -
Bva13g00828 355 Pfam Zinc knuckle 163 179 IPR001878 GO:0003676|GO:0008270
Bva13g00828 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 121 IPR000504 GO:0003723
Bva13g00828 355 Gene3D - 39 159 IPR012677 -
Bva13g00828 355 SUPERFAMILY RNA-binding domain, RBD 45 158 IPR035979 GO:0003676
Bva13g00828 355 MobiDBLite consensus disorder prediction 131 153 - -
Bva13g00828 355 MobiDBLite consensus disorder prediction 119 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00828 Bva-Chr13 3860891 3864274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00828 52 141 Eukaryotic Initiation Factors Gene Family AT4G34110 35.556 7.59e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00828 - - pvy:116124756 247.669