Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00811 ATGTCATTCCGAAGCATAGTTCGTGATGTGAGGGATAGTTTTGGGAGCTTGTCTAGAAGGAATTTTGATATTAGGTTGACCGGCCATCACAGAGGAGAGTCTCATGGTTCGGTAAATGATCTGCATGACCAACCTTTAGTAATTCAAAATAGTCGCTGGGCTAGCCTACCCCCAGAACTACTATATGATGTCATTAGAAGGCTGGAGGAAAGTGAGAGTACGTGGCCTACTCGAAAGTATGTTGTTGCATGCGCTGCTGTTTGCCGCTCTTGGAGAAATATGTGCAAGGAAATTGTGAAGAGCCCGGAGTTCTGTGGCAAGCTTACTCTCCCTGTCTCCCTGAAGCTGCCAGGACCACGTGATGGAACCATTCAATGTTTCATCAAAAGGGATAAGTCTAATTTAACATACCATCTATATCTTTGTCTTAGCCCTGCTTTGCTggttgaaaatggaaaatttctcctttctgCCAAGAGGACGCGAAGAACAACTTACACAGAGTATGTTATCTCTATGGACGCTGACAACATCTCTAGATCAAGTAGTACTTACATTGGAAAGTTGAGgtcaaacttccttggtacaaaattcataatatatgATACACAGCCTCCATGCACTTCTGCTCATATTTCCCCTCCTGGCAAGACTAGCAAAAGGTTTTATTCCAAAAAAGTGTCACCCAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAATTAAATGTGCTTGGAACTCGAGGTCCGAGGAGGATGCACTGCATTATGCATTCCATCCCAGCCTCAGCACTAGATGCAGGCGGCAGTGTTCCAGGCCAGCCAGAGCTTCTTCCTCGCGCCCACGAGGACTCATTCCAGAGCATTACTTTTTCAAAGTCTCTGGATCACTCTATTGAGTTCAGCAGTGCCAGATTTTCTGAAATTGGGGGATCTGTCAATGAAGATGAGGATGACAAGGCAAGGCCATTGGTTCTGAAAAACAAGCCTCCAAGATGGCACGAACAATTACAATGCTGGTGCCTCAATTTCCGGGGACGGGTGACAGTTGCATCTGTTAAAAACTTCCAGCTGATTGCTGCCACCCAGCCAGCTGCCGGCGCACCAACTCCAGCTCAGCCTGCGCCACCAGATCATGATAAGATAATTCTGCAGTTTGGCAAAGTTGGGAAAGATATGTTCACCATGGACTATCGATATCCTATATCTGCTTTCCAGGCATTTGCAATATGCCTAAGTAGCTTTGACACCAAATTGGCTTGTGAATA 1277 0.4377 MSFRSIVRDVRDSFGSLSRRNFDIRLTGHHRGESHGSVNDLHDQPLVIQNSRWASLPPELLYDVIRRLEESESTWPTRKYVVACAAVCRSWRNMCKEIVKSPEFCGKLTLPVSLKLPGPRDGTIQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPCTSAHISPPGKTSKRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCIMHSIPASALDAGGSVPGQPELLPRAHEDSFQSITFSKSLDHSIEFSSARFSEIGGSVNEDEDDKARPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPAQPAPPDHDKIILQFGKVGKDMFTMDYRYPISAFQAFAICLSSFDTKLACE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00811 425 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bva13g00811 425 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Bva13g00811 425 PANTHER TUBBY-RELATED 1 425 - -
Bva13g00811 425 Pfam Tub family 114 420 IPR000007 -
Bva13g00811 425 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Bva13g00811 425 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bva13g00811 425 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bva13g00811 425 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Bva13g00811 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Bva13g00811 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Bva13g00811 425 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bva13g00811 425 Gene3D Tubby Protein; Chain A 113 419 IPR025659 -
Bva13g00811 425 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 425 - -
Bva13g00811 425 Gene3D - 48 101 - -
Bva13g00811 425 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Bva13g00811 425 SUPERFAMILY Tubby C-terminal domain-like 102 425 IPR025659 -
Bva13g00811 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00811 Bva-Chr13 3795552 3798513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00811 1 425 TUB Transcription Factor Family AT1G76900 70.241 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva13g00811 Tub 2.6e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00811 K19600 - gmx:100814578 771.155