Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00763 atgaggCAACGACAACCCAAATCTGCCGAGGATGTTAGATCCGATGATAAGCTTCCTAAAGTTAATTGGTTGCAACACGCCGGTGCACATGATAACTTCTCATGCCAAAACAAGTTTTTGAGctcaaattttctgttttccttgCCAACACAAAAACCTTGTTCCCAGGAAGCAACCGATGGGGGtTTTGTGGTTGGTCAAAGTCAAAATATTCCAAGGTTGCAAAAAGCACAAGTTGAAAAGGCTTGGCATGCTCTCTCGAGTCTACAGATTTCTTGCAGGAGTTATACCAAACCTGGAAAAACTGTACAAATTACTCCTCCTCTTCATGAAGATGGGAGAATAAATTCCTTCCAGAAAGCCTCTGAGAATGACAGATGTTATCCAAATTTGCAAAATCATAAACTTGTCTGTGAAAACAATGTCGAGTCTAATCAATATTCATCAAGTAATGCTAAACCTGGAGATGAAGGAAATAATAGTCTCAGATATTCTGATGACACGAGAACTCCAACAGTAAATAATCATTGTTCTCTGGTTTTGGATGGTTCGGCGAACATACGTACTAACTATACTGGTCTAAACAAAGATTCTACAAAATGCATGGCTGGTGacattgatgatgatgatgatgatttcCTTGAGAACATTGATGTTGATCAAATAGTGGAAAACTATCAGTCAAGTTGTACTCCTCAATCACCAGTATCCAAATTTCCTCCTATTACTCCAGCTTTAGATAAGAACAAGTTTGCTGGACAAGAGGAAAATTGTTTGCCACCAGAGTTGTGCTCGGATTGCATTCATGGTTATAAGGTATGGCTTTGCCCTGAAGCAGCAAATCATTTGCAGGAATTTAAGGATAATCTAATTGCCATCTCCAACGAACTTCTTGACAATGGGGACAATCTAGATCCAACTGAGATTGCAAGGCTCCGCCAAGATAGGTCACAGCTCAATAAGCAAATTCAGCAGCTTGAAAGATATCTCCAATCTAGTAATCTTGATGGGGAAAGGCAAAAGTCACATTTTTCTGCGTCAGCAGCACCTCCTGCATCTTTCCTGTTTGAAACACCCCACCAAAGTGTCCCCAGGAGTGGACCAGTGAGATATGATAACCAGGTTTATATGGGTAATGAGCCATATGGGTCGTTCTCTGCAGCAGATAAGTATGGGATGTCAGCAGGTCCAGTGGAGAGGGAAGCATACATCCCAAAGATTATTGATGTTAATTATATTGAAGGTTCTGGAGATGAGCGCTGGAGGAGCCAGAATTTCCCTTGGACAAAAAAGTTGGAGGCCAATAATAAGAAAGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGAGAGGTTATCAATGCAACCATGAGTGGCTgtgatgtttttgttttaatgccAACTGGTGGAGGGAAGAGTCTGACCTATCAGCTCCCTGCTCTTGTTTGTCCAGGTATAACACTGGTAATTTCCCCCCTTGTGTCCCTTATACAAGATCAAATAATGCATCTATTACAGGCAAATATACCTGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAGATCCTTAGAGAACTTAATTCTGATTATTGTAAATACAAGTTGTTATATGTCACACCAGAGAAGGTGGCTAAAAGTGATGCTCTTCTACGGCAGTTGGACAGTTTATATGTTCGTGAGTTGCTTGCACGGATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGATTTCAGACCAGATTATCAGGGCCTTGGTATATTGAAACAGAAATTCCCAAATACTCCCGTTTTAGCTTTAACAGCTACAGCAACAGCCAGTGTAAAAGAAGATGTTGTGCAAGCTCTCGGTCTTGTCAACTGCATTATTTTCCGGCAAAGTTTTAATCGCTCAAACTTGTGGTATTCTGTTATTcccaagacaaaaaaatgcTTGGAAGatattgacaaattcatcAGGGAAAATCATTTTGATGAATGCGGAATTATCTATTGTCTTTCACGGATGGACTGCGAAAAAGTAGCCGAAAAGTTGCAGGAATATGGACATAAGGCCGCATTTTATCATGGTAGCATGGATCCTGCTCAACGTGCATTTGTTCAAAAGCAGTGGAGCAAAGatgaaatcaatataatttgtgCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGGTTTGTAATCCATCATTCTCTTCCAAAATCAATTGAGGGCTACCACCAGGAGTGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGCGTACTATATTACAGCTATAGTGATTATATACGAGTAAAGCATATGTTAAGTCAAGGATCAATAGAGCAAAGTCCCTTGACAGGATACGGTCGTGCAAATATGACAAATTCAGGGAGGATACTGGAAACTAACACTGAAAATCTTTTGCGAATGGTCAGTTTTTGTGAAAATGATGTTGATTGTCGGCGCCTTCTGCAGCTTGCTCATtttggggagaagtttgattCTGCAACCTGTAAGAAAACATGTGATAATTGTTTGAAGATTAAAAGCTTTATTGAGAAGGATGTTACAGAGACCGCAAAGCAATTGgtTGAACTCGTTAAGCTAACGGGGCAGCATTTCTCATCATCTCACATATTAGAAGTGTACCGTGGTTCCTTAAATCAGTTTgTCAAGAAACACCGACATGAGACTGTGAGACTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGTGTACTGCATTATCTTGTTGTTGAGGATTTTCTCGTGGaggatgttaagaaaaatgacaTCTATGGATCGGTCTCATCAATATTGAAGGTAAACGAGGCCAAGGTCCGTAATCTGTTTGGCGGGCAGAGAATCATATTAAGATTTCCTTCCTCCGTAAAAGCACCCAAGCAGGGGAAACCTGAAGTAACTCCAGCTAAAGGCTCTTTAACTTCTGGGAAGCTGTGTCTTCCACAAATTGATACTCCTGTTCAACCTCAAAGAGAAAAGGACTTGGATCTTTCAGCTAAATTATACTCTGCTCTGCGGATGCTGCGGACAGCTCTTGTCAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGTAACGCTACACTGCAGCAGATAAGCAAGAGAATACCCAGAACAAAGGAAGAACTCCTTGATATCAATGGCATTGGCAAGGCTAAGATAAGCAAGTATGGAGACCGGGTACTGGAAACAATTGAGAAGACTTTAGAGGAGTATTACGTGCATGGCAAGAACAGCAGCGGCAGCAATGAGAGCACTGATTCTGCCAAAAGGAGAAGAGAGGCATTAGGAGACCTGAATGCAAAGTTGGAAGATGATGATTTGATCAATGGTACTAATTGTTCAAAGAGAAGAACGCTGAAGAAACCAAACAGAAAAACTGAGGTTCATGATTCTGCGGAGGAAGATTTCTACGTTGACTGTATAGATGATGACTTAGATTTTGACAAGTTGGAAGATGATGCATTGGATAAAATGACTATTAAAAATGCTTTAGGAAGAGTCTTACCTCAATGGACATCATCTTG 3581 0.3951 MRQRQPKSAEDVRSDDKLPKVNWLQHAGAHDNFSCQNKFLSSNFLFSLPTQKPCSQEATDGGFVVGQSQNIPRLQKAQVEKAWHALSSLQISCRSYTKPGKTVQITPPLHEDGRINSFQKASENDRCYPNLQNHKLVCENNVESNQYSSSNAKPGDEGNNSLRYSDDTRTPTVNNHCSLVLDGSANIRTNYTGLNKDSTKCMAGDIDDDDDDFLENIDVDQIVENYQSSCTPQSPVSKFPPITPALDKNKFAGQEENCLPPELCSDCIHGYKVWLCPEAANHLQEFKDNLIAISNELLDNGDNLDPTEIARLRQDRSQLNKQIQQLERYLQSSNLDGERQKSHFSASAAPPASFLFETPHQSVPRSGPVRYDNQVYMGNEPYGSFSAADKYGMSAGPVEREAYIPKIIDVNYIEGSGDERWRSQNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALVCPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDALLRQLDSLYVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRSNLWYSVIPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQEYGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSQGSIEQSPLTGYGRANMTNSGRILETNTENLLRMVSFCENDVDCRRLLQLAHFGEKFDSATCKKTCDNCLKIKSFIEKDVTETAKQLVELVKLTGQHFSSSHILEVYRGSLNQFVKKHRHETVRLHGAGKHLAKGEASRVLHYLVVEDFLVEDVKKNDIYGSVSSILKVNEAKVRNLFGGQRIILRFPSSVKAPKQGKPEVTPAKGSLTSGKLCLPQIDTPVQPQREKDLDLSAKLYSALRMLRTALVREAGEGVMAYHIFGNATLQQISKRIPRTKEELLDINGIGKAKISKYGDRVLETIEKTLEEYYVHGKNSSGSNESTDSAKRRREALGDLNAKLEDDDLINGTNCSKRRTLKKPNRKTEVHDSAEEDFYVDCIDDDLDFDKLEDDALDKMTIKNALGRVLPQWTSS 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00763 1193 Pfam Helicase conserved C-terminal domain 652 758 IPR001650 -
Bva13g00763 1193 CDD SF2_C_RecQ 636 768 - -
Bva13g00763 1193 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 567 576 IPR002464 -
Bva13g00763 1193 ProSiteProfiles Rhodanese domain profile. 668 710 IPR001763 -
Bva13g00763 1193 SMART RQC_2 860 970 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bva13g00763 1193 SMART ultradead3 441 644 IPR014001 -
Bva13g00763 1193 Pfam RQC domain 857 972 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bva13g00763 1193 ProSiteProfiles HRDC domain profile. 1011 1093 IPR002121 GO:0003676
Bva13g00763 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 777 IPR027417 -
Bva13g00763 1193 CDD DEXHc_RecQ 433 635 - -
Bva13g00763 1193 PANTHER DNA HELICASE RECQ FAMILY MEMBER 136 1160 - -
Bva13g00763 1193 Gene3D - 858 967 IPR036388 -
Bva13g00763 1193 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 653 813 IPR001650 -
Bva13g00763 1193 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 136 1160 - -
Bva13g00763 1193 SUPERFAMILY HRDC-like 1014 1088 IPR010997 GO:0000166|GO:0044237
Bva13g00763 1193 SMART hrdc7 1011 1093 IPR002121 GO:0003676
Bva13g00763 1193 Gene3D - 410 635 IPR027417 -
Bva13g00763 1193 Coils Coil 309 336 - -
Bva13g00763 1193 Gene3D HRDC domain 1008 1098 IPR044876 -
Bva13g00763 1193 Pfam DEAD/DEAH box helicase 447 615 IPR011545 GO:0003676|GO:0005524
Bva13g00763 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 901 IPR027417 -
Bva13g00763 1193 Pfam HRDC domain 1015 1083 IPR002121 GO:0003676
Bva13g00763 1193 MobiDBLite consensus disorder prediction 145 168 - -
Bva13g00763 1193 Gene3D - 636 853 IPR027417 -
Bva13g00763 1193 SMART helicmild6 678 759 IPR001650 -
Bva13g00763 1193 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 453 628 IPR014001 -
Bva13g00763 1193 Pfam RecQ zinc-binding 770 851 IPR032284 -
Bva13g00763 1193 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 437 911 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00763 Bva-Chr13 3567698 3575467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00763 667 790 Eukaryotic Initiation Factors Gene Family AT3G19760 23.622 1.45e-07 53.5