Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva13g00746 | ATGGAGACTCAGTTCAATCACAGTCTCTTTGAGAGGCGCCCAATCCTCAAGTCCAAGAGCCCCGCCGTTAAATGGGTTAAGGAATGGGTTCCTCAAGATCTTGTAGCAACTGGTGGGAAGTGCATGGTCTTAAGATGGGTAACAGAGGATACTTTAAACGCCTTgaaagagaagacaaaagaGCCAGCAGCACCGGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTCCTTTGCAGCTATGAAGGCTGTGGGAAGACTTTCATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATTCATGGAGAAAGGCAATTTGTTTGTCATTATGAGGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTTTGTCCTCATGAAGGTTGTGGTAAGGCCTTTTCCCTGGATTTCAATCTAAGGTCTCACATGAAGACACATTCACAAGAAAACTATCATATCTGTCCGTACGCTGATTGTGGAAAGAGATATGCTCATGAATACAAGTTAAAGAATCACATTGCTTCTCACCACGAAAAGAATCCATCAATGGATGTGGCAAAGTATACTACTCCACCTTCAGAGAAGCAAACAAAAGCTACAAAACCTTCTGGAGGCGCTTACGGTTCTGCATCATCTGATCGTCCTTATGCATGCCCTTATGAAGGGTGTGAAAAAGCCTATATCCATGAATACAAGCTTAAACTCCATTTGAAGAGGGAGCACCCCGGTCACATGTCTGACGAAAACGCAGAGATTGCTCTAGCTAATGCTGACAACGAAATGGATGAAGCAAGTGACCAAGACGCCTATGGTGGAAAACGAGCAAATGGTAAAAGTCAGAAGCAAAGTAAGCCCAAACCAAACTTGAAGTTGCCTCCTTCAAAGATTTCACAACGCAAAGGGTCAACTCCTTCTGCCCCTTtgaatgtaataaaaaaacctTGGCCTGTAAAAGATGAAGCTTATGAGGAAGAAGATAGCGAAGAAACCGAAGAGGATAGAGACAATGTTGAGGATGGTTGGAGATATGCAGGAAACAATGAAGATGACGATGAAGAAACAGAGTATGAAGACTG | 1118 | 0.4213 | METQFNHSLFERRPILKSKSPAVKWVKEWVPQDLVATGGKCMVLRWVTEDTLNALKEKTKEPAAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYADCGKRYAHEYKLKNHIASHHEKNPSMDVAKYTTPPSEKQTKATKPSGGAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAEIALANADNEMDEASDQDAYGGKRANGKSQKQSKPKPNLKLPPSKISQRKGSTPSAPLNVIKKPWPVKDEAYEEEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED | 372 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva13g00746 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 130 | IPR013087 | - | |
| Bva13g00746 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 168 | 191 | IPR013087 | - | |
| Bva13g00746 | 372 | MobiDBLite | consensus disorder prediction | 335 | 349 | - | - | |
| Bva13g00746 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 232 | 255 | IPR013087 | - | |
| Bva13g00746 | 372 | Gene3D | Classic Zinc Finger | 204 | 268 | - | - | |
| Bva13g00746 | 372 | MobiDBLite | consensus disorder prediction | 275 | 372 | - | - | |
| Bva13g00746 | 372 | PANTHER | TRANSCRIPTIONAL REPRESSOR PROTEIN YY | 4 | 371 | - | - | |
| Bva13g00746 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 195 | IPR013087 | - | |
| Bva13g00746 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 230 | 260 | IPR013087 | - | |
| Bva13g00746 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 79 | 101 | IPR013087 | - | |
| Bva13g00746 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 135 | IPR013087 | - | |
| Bva13g00746 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 77 | 106 | IPR013087 | - | |
| Bva13g00746 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 136 | 165 | IPR013087 | - | |
| Bva13g00746 | 372 | Gene3D | Classic Zinc Finger | 77 | 102 | - | - | |
| Bva13g00746 | 372 | Gene3D | Classic Zinc Finger | 134 | 161 | - | - | |
| Bva13g00746 | 372 | PANTHER | BNAA03G13270D PROTEIN | 4 | 371 | - | - | |
| Bva13g00746 | 372 | MobiDBLite | consensus disorder prediction | 188 | 227 | - | - | |
| Bva13g00746 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 130 | IPR036236 | - | |
| Bva13g00746 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 117 | 169 | IPR036236 | - | |
| Bva13g00746 | 372 | Gene3D | Classic Zinc Finger | 103 | 133 | - | - | |
| Bva13g00746 | 372 | Gene3D | Classic Zinc Finger | 163 | 195 | - | - | |
| Bva13g00746 | 372 | SMART | c2h2final6 | 136 | 160 | IPR013087 | - | |
| Bva13g00746 | 372 | SMART | c2h2final6 | 230 | 255 | IPR013087 | - | |
| Bva13g00746 | 372 | SMART | c2h2final6 | 77 | 101 | IPR013087 | - | |
| Bva13g00746 | 372 | SMART | c2h2final6 | 106 | 130 | IPR013087 | - | |
| Bva13g00746 | 372 | SMART | c2h2final6 | 166 | 190 | IPR013087 | - | |
| Bva13g00746 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 225 | 253 | IPR036236 | - | |
| Bva13g00746 | 372 | Coils | Coil | 261 | 281 | - | - | |
| Bva13g00746 | 372 | MobiDBLite | consensus disorder prediction | 200 | 221 | - | - | |
| Bva13g00746 | 372 | Pfam | Zinc finger, C2H2 type | 166 | 190 | IPR013087 | - | |
| Bva13g00746 | 372 | Pfam | Zinc finger, C2H2 type | 136 | 160 | IPR013087 | - | |
| Bva13g00746 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 138 | 160 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva13g00746 | Bva-Chr13 | 3499813 | 3502875 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva13g00746 | 10 | 358 | C2H2 Transcription Factor Family | AT4G06634 | 65.301 | 7.16e-149 | 424 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Bva13g00746 | zf-C2H2 | 0.0082 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva13g00746 | - | - | qsu:111997563 | 623.239 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva13g00746 | 13 | 3499813 | 3502875 | Bva13g00746 | 13 | 3499813 | 3502875 | ECH |