Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00730 ATGCAAGTCCTGAAGCAATCATCAAGCTTGCAATCTAGTAAGGAGATAGTAATGCTACCGAAGAAGCTTGATGCCCCTGACTGTGGTGACGACTTTGATTCTTTGCGCACACAAGCTTTAGAGCAACCATCAAGCTTGCAAATAATTATCAGAAAGGACATTTCAGAAGTGATGCCAGCGTTGGGGCAACCATCAATGTTGCAATTATTGTTCACCAAGAAGCTATCACAACCTATAATCACTGATTGCAAGGTACTAGACGTGGATGGGAACCCTATTAAGACTATTCTTGCTGACAAGAACGGTAATCAAATGGTTCCCACAAGTCTCCCTCACCCGATCAAGCTTGAAATTGTGGTTCTTGATGGAGATTTTCCATTTGGGGATAACGAGACATGGACTAGTGAGCAATTCAACAACCACATAGTGAGGGAGAGAGTCGGCAAGCCACCATTGCTTACCGGAGATTTGAATGCCACTATGAGGGATGGAATTGCACCTATTGGAGACATTAAGTTTACGGGCAACTCTTTATGGCTCCGTAGCGGGAAATTTAGGGTTGCTGTGAGAGTGGCTCCAGAGAGTACTTATGGGGTGCGAATTCGCGAAGGGATGACTGAAGCATTTGTTGTTAAGAATCATCACGGAAGAGTATCCTCAAATTGGCGGCAAATTACCTTGTTTGGTCCACCAACACCTAGAATGCATGATTGTGGTATGGAGGAGGATGATATTCAAGCACAGGCATGCAAATTCCCAAGAGtcggaaaaggaagaaatgacTCTAACAAGATAGGCTCTAAAGGGAACAATGAGCAATACCCAGATGAGAAAGACGATGGAGAGCTTAGAAGAAAAGATGGAGTCATTGGTTCTAGAATCATTAGGTGTTCAAGAGCAAGTGTGGGAAAAGATAGACACAGCAAAGTCATgacttcaaagggtttaagaGACAGAAGGGTTAGGCTCTCAGTGGCTACAGCTATTCAGTTCTATGACCTTCAAGATCGGCTTGGTTATGACCAGCCCAGTAAAGCTGTGGAATGGCTGATTAAAAGAGCCGCGGATGCCATTGCAGAGCTCCCTTCTCTGAGCAACACTTTCCCAGATAGCCCAAAGCATCCAAGCGATGAGAAAAGGGCAAGTGTGAGTACAGCACAAGTCTTTGATTCAGCTGAGCTAGATTTATTGAGTAATTACCAGCAGAATCAAGCCAGATCTAAATCTGCTCGTAGCAGCACCTTGGAGACAAGCAAGGTCATgacttcaaagggtttaagaGACAGAAGGGTTAGGCTCTCAGTGGCTACAGCTATTCAGTTCTATGACCTTCAAGATCGGCTCGGTTATGACCAGCCCAGTAAAGCTGTGGAATGGCTGATTAAAAGAGCCGCGGATGCCATTGCAGAGCTCCCTTCTCGGAGCAATACTTTCCTAGATGGCCCAAAGCATCCAAGCGATGAGAAAAGGGCAAGTGTGAGTACAGAACAAGTCTTTGATTCAGCTGAGCTAGATTTATTGAGTAATTACCAGCAGAATCAAGCCAGATCTAAATCTGCTCGTAGCAGCACCTCGGAGACAAGCAAAGGTTCTGGCTTGACATACTCAAGGTCTTA 1616 0.4356 MQVLKQSSSLQSSKEIVMLPKKLDAPDCGDDFDSLRTQALEQPSSLQIIIRKDISEVMPALGQPSMLQLLFTKKLSQPIITDCKVLDVDGNPIKTILADKNGNQMVPTSLPHPIKLEIVVLDGDFPFGDNETWTSEQFNNHIVRERVGKPPLLTGDLNATMRDGIAPIGDIKFTGNSLWLRSGKFRVAVRVAPESTYGVRIREGMTEAFVVKNHHGRVSSNWRQITLFGPPTPRMHDCGMEEDDIQAQACKFPRVGKGRNDSNKIGSKGNNEQYPDEKDDGELRRKDGVIGSRIIRCSRASVGKDRHSKVMTSKGLRDRRVRLSVATAIQFYDLQDRLGYDQPSKAVEWLIKRAADAIAELPSLSNTFPDSPKHPSDEKRASVSTAQVFDSAELDLLSNYQQNQARSKSARSSTLETSKVMTSKGLRDRRVRLSVATAIQFYDLQDRLGYDQPSKAVEWLIKRAADAIAELPSRSNTFLDGPKHPSDEKRASVSTEQVFDSAELDLLSNYQQNQARSKSARSSTSETSKGSGLTYSRS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00730 538 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 418 538 IPR005333 GO:0003700
Bva13g00730 538 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 240 419 IPR005333 GO:0003700
Bva13g00730 538 MobiDBLite consensus disorder prediction 510 538 - -
Bva13g00730 538 Pfam TCP family transcription factor 303 409 IPR017887 -
Bva13g00730 538 Pfam TCP family transcription factor 418 529 IPR017887 -
Bva13g00730 538 Pfam Calmodulin binding protein-like N-terminal domain 67 214 IPR046831 -
Bva13g00730 538 ProSiteProfiles TCP domain profile. 408 471 IPR017887 -
Bva13g00730 538 PANTHER TRANSCRIPTION FACTOR TCP24 418 538 - -
Bva13g00730 538 PANTHER TRANSCRIPTION FACTOR TCP24 240 419 - -
Bva13g00730 538 MobiDBLite consensus disorder prediction 363 382 - -
Bva13g00730 538 MobiDBLite consensus disorder prediction 252 283 - -
Bva13g00730 538 MobiDBLite consensus disorder prediction 474 497 - -
Bva13g00730 538 ProSiteProfiles TCP domain profile. 303 361 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00730 Bva-Chr13 3406378 3409486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00730 33 218 Calmodulin-binding Proteins AT5G57580 39.234 3.66e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Bva13g00730 Calmodulin_bind 6.4e-54 No_clan