Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00699 ATGGCATTTACGGCTTCAAATCAGACGACTGGTGGAAACCATGCAGGGGCATCCAATGATGCTTTATACAAGGAATTGTGGCACGCCTGTGCGGGTCCCCTTGTCACTCTTCCTCGTGAAGGGGAACGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTCGAGGCATCCATGCATCAAGCAGTAGGGCAGCAAATTCCTTCTTTCAATCTgccttctaaaattttatgtaaagtGGTCAACGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGTGAAGTGACAAGCCCGGATGACCCTCTGGCAGAACCTCCGAGGTGCACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACCAGCACACATGGAGGTTTCTCTGTTTTCCGCAGACATGCTGATGATTGTCTGCCACCACTGGATATGTCTCAGCAGCCGCCATGGCAAGAGTTAGTTGCAAGTGATTTGCATGGAAATGAATGGCATTTTCGGCATATTTTTCGAGGGCAACCTAGGCGCCACTTACTTACCACTGGATGGAGTGTCTTCGTCAgttcaaaaaaattagtggCTGGTGATGCCTTTATATTCCTAAGAGGTGAAAATGGAGAGCTGCGTGTTGGGGTTAGGAGGCTTATGAGACAGCAAAGCAGTATGCCTTCTTCTGTCATTTCTAGTCACAGTATGCATCTTGGTGTTCTGGCAACTGCATCTCATGCCATTGCCACTGGAACACTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGTTCAGAGTTTATTGTAAGTGTCAACAAGTATCTTGAAGCTCGTAGTCATAAGCTCTCTGTTGGGATGAGGTTCAAGATGAGATTTGAGGGTGATGAAGTCCCTGAACGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATACATCACCTGTATGGGCTGATTCTGAGTGGCGATCCCTAAAGGTTCAATGGGATGAACCTTCAACAATTTTGCGCCCAGATAGGGTTTCTCCATGGGAATTGGAGCCACTTGTTGCCACCACTCCTGCGAGCTCCCAACCATCCCAAAGAAATAAGAGGGCACGGCCTCCCATTCTACCGTCAACAATGCCAGATTCTTCTGTGCATGGTGCATGGAAAGCACCAGTTGAATCTCCACCTTTCTCATATCGTGACCCACAACATGGACAAGACCTCTATTCATCGCCCAAGTTCAATTCTACTGCAACTAGTTTTCTTGGTTTTGGTGGTAACGGCTCTCTGGGAACTGGTTCCAACAATTCGACTTATTGGTCTAACAGGTTGGAGAACCCTACTGAGTCTTTAGCCCCCAAAGAATCCGGTGAGAAGAGACAAGCAACTGGAAATGGCTGCAGGCTTTTTGGGATTCAGCTGCTTGAGAATTCTAACATAGAAGAAAGTGTGCCAACAGTCACGTTCTCAGGAAGGATGGCCGATGATGGGCCTGTTCCGTCTCTAGATGTGGAGTCTGACCAGCATTCAGAACCATCAAATGTAAACCGATCAGATGTTCCTTCAGTGAATTGTGATGCTGAAAAATCATGCCCACGGTCTCCCCAGGAGTCACAAAGTGGGCAAATAAGGAGCTGCACAAAGattcaTATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTGACACGGTTTGATGGATATGAGGATCTACTAAAGAAGCTGGAGCATATGTTTGACATACAGGGCGAGCTTTCTGGATCCACAAAAAAGTGGCAGGTTGTCTACACTGATAATGAAGACGATGTGATGATGGTTGGAGATGATCCATGGCATGAGTTCTGTAACGTGGtaaggaaaattttcatctaCACTACGGAAGAGGTGAAGAAGCTTTCACCCAAAATAGGACTTCCAATCAACGATGAAGCTAAACCCGACAAGCTGGATGCTACAGTCAATACTGAGGACCAATCATCTGTTGTGGGGAATGGCTGTTA 2015 0.4536 MAFTASNQTTGGNHAGASNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQAVGQQIPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLAEPPRCTVHSFCKTLTASDTSTHGGFSVFRRHADDCLPPLDMSQQPPWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSSMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNTSPVWADSEWRSLKVQWDEPSTILRPDRVSPWELEPLVATTPASSQPSQRNKRARPPILPSTMPDSSVHGAWKAPVESPPFSYRDPQHGQDLYSSPKFNSTATSFLGFGGNGSLGTGSNNSTYWSNRLENPTESLAPKESGEKRQATGNGCRLFGIQLLENSNIEESVPTVTFSGRMADDGPVPSLDVESDQHSEPSNVNRSDVPSVNCDAEKSCPRSPQESQSGQIRSCTKIHMQGMAVGRAVDLTRFDGYEDLLKKLEHMFDIQGELSGSTKKWQVVYTDNEDDVMMVGDDPWHEFCNVVRKIFIYTTEEVKKLSPKIGLPINDEAKPDKLDATVNTEDQSSVVGNGC 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00699 671 MobiDBLite consensus disorder prediction 446 467 - -
Bva13g00699 671 PANTHER AUXIN RESPONSE FACTOR 9 10 654 - -
Bva13g00699 671 Gene3D - 290 363 - -
Bva13g00699 671 Pfam AUX/IAA family 593 639 IPR033389 -
Bva13g00699 671 Pfam AUX/IAA family 546 585 IPR033389 -
Bva13g00699 671 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva13g00699 671 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva13g00699 671 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Bva13g00699 671 Gene3D - 544 638 - -
Bva13g00699 671 ProSiteProfiles PB1 domain profile. 549 642 IPR000270 GO:0005515
Bva13g00699 671 SMART B3_2 127 229 IPR003340 GO:0003677
Bva13g00699 671 MobiDBLite consensus disorder prediction 360 394 - -
Bva13g00699 671 SUPERFAMILY CAD & PB1 domains 551 626 - -
Bva13g00699 671 CDD B3_DNA 125 227 IPR003340 GO:0003677
Bva13g00699 671 Gene3D - 124 229 IPR015300 -
Bva13g00699 671 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Bva13g00699 671 MobiDBLite consensus disorder prediction 511 549 - -
Bva13g00699 671 MobiDBLite consensus disorder prediction 494 549 - -
Bva13g00699 671 SUPERFAMILY DNA-binding pseudobarrel domain 115 256 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00699 Bva-Chr13 3271344 3278109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00699 3 665 B3 DNA Binding Superfamily AT1G59750 70.299 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva13g00699 AUX_IAA 1.5e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00699 K14486 - gmx:100793224 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00699 13 3271344 3278109 Bva13g00699 13 3271344 3278109 ECH