Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00688 ATGTCAGAAATGCGACTTTCTGATCCAAGCAAGCTACACCTGAAGAAGGAGCTCAATCAAATTCGTAAAGCTGCTCGTGTACTGAGGGATCCTGGTACAACCTCTTCCTGGAAGTCACCACTTAACTCCTCAAGATCTGTGGCagctgcttctgcttctgcatgGAGGAGTAACTTGGAGAATGACAGTAAAAGGTTCAATGGCAATTCCCAACATGATTCCCAGTTCTCTCTGCAAAATGgaaacaataacaacaacaatggGAAAGAGAAGAGGGTGTTCTTGTACAATTGGAAGAACTACAAATCTTCCAGCGAGAAGAGTGGAAGGGCCAAAAACAATGAAGACtacgaagaagaagatgatgaagaagatgcTGGTGGCAATGATggatcttcttctcttctggGGAGCTTCGAGGATAGCCTCAGTGATGCTCGCAATGGCTGTGATTCAAAGAGCGATACTTACTTGGGTGTTGGTGGGACTCGTTCTTCTATCTTCCGTTGTAGAGATGCAAATCTTGTTTCTTTGGGGACACCCAGAAGAGGACTGGGCATTAAGAAAAAGAGTAAGAAAACTAACACCCATTTggatattttaactaaatatcAACAACGAGAAACCAATCTAGCCAGGAAGGTAGGAAATTCCAAAGCTTTTTTAGAAGGGCATCCTTCAATGCCTTTTAGCAGGGATGACTCAGTTGAGCAATCTGATGATACTGAAGATTACTGTAATTCCGAGGATTTAAGGAGAAATTCTAGGGCCTCTCCTTTGCTTTTGAAACTAAAGCATAAAAATTGGTCTCGGAATTCCTCTAAATTTTTGAGAACCAGTCGAAAAGAGGACTCTTCTTATTCTTATGGTACCCCTGCATTGTCAACTAGTTCTTATAGGTATGGTCACTATAATCCTAGTACTGTTGGATCCTGGGATGGCACGACAACCTCTGTGAATGATGGTGATGATGAGGTAGATGATCATTTAGATTTGCCCGGCCGACAGGGATGTGGGATTCCTTGCTATTGGTCCAAGAGGACACCAAGACACAGAGGGATGTGTGGGAGTTCTTACTCTCCTTCTCTTTCAGACACTTTAAGGAGGAAGGGAAGTAGCATCCTCTGTGGAAGTCAAACTATCTATCCAAGACACCGGAGATCTTTATCAACTTCTGACAAGCGAAGAATTTCTTCAAGGAGTGCTCAAGGTGTTCTACCCTTGCTTACTAACAGTGGGGACGTCAGAGGAGGGTCATCCCTAGGAACTGGACAGAGTGATGACGAACTTTCTACTAATTTTGGGGAGCTTGATCTCGAGGGTTTAAGCCGGTTGGATGGGAGAAGGTGGTCATTAAGTTGTAGGAGTCAAGAAGGATTGGAGATTGTTGCTTTCAATGGGGAAGGGGATGAGGAAGGCACACCAGAAAATACTAGGAGTTTCAGCCAAAAGTATAAGCCTATGTTCTTTGGTGAATTAATTGGGCAGAATATCGTTGTCCAGTCACTTATAAGTGCTATTTCAAGGGGACGAATTGCTCCCGTTTATCTTTTCCAAGGTCCCCGGGGGACTGGTAAAACGTCAACAGCCAGGATTTTTGCTGCTGCCTTGAATTGTCTGGCTCCTGATGACAGTAAGCCTTGCGGTTACTGCAGGGAATGTACTGATTTTGTTTCTAACAAAAGCAGGGATCTGTTGGAAGTTGATGGAACCAATAAGAAAGGGATAGATAGAGTtagatatatattgaaaaaattatcagtAGGGTCATCTTCAGCCTCCTCACGGTATATGGTTTTTGTTATTGATGAGTGTCACTTGCTACCCTCAAAGACATGGCTGGCACTTCTCAAGTTTCTTGAAGAACCACTGCAGCGTGTTGTCTTCATATTTATAACAACAGATCCTGACAATGTGCCAAGAACAATACAATCTCGATGCCAGAAGTACctctttaacaaaattaaagacGGGGATATTGTGGCAAGGTTGAGGAAAATATCTGCTGAGGAGAATTTGGACGTTGAAACAGATGCACTGGACCTTATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTAGAGCAGTTGAGTTTGCTGGGAAAAAGAATTACTACATCTCTTGTCAATGAACTTGTAGGTGTAGTTTCAGATGAAAAATTACTGGAACTATTGGAGTTAGCAATGTCATCTGACACAGCAGAAACAGTGAAAAGATCCCGAGAATTGATGGATTCTGGAGTTGATCCAATGATTTTGATGTCTCAACTGGCTAGCCTTATTATGGACATCATTGCTGGTTCATATACTGTTGTTGATGCGAAACCTGGTGATTCATTCTTTGGGGGACGAAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAGCAAGCTTTGAAGCTTCTCTCAGATGCTGAGAAGCAGTTGAGAACTTCCAGTGAACGCTCAACATGGTTCACAGCAACTCTTTTGCAGCTTGGTTCGGTGCCTTCTACAGATCTTACTCAGTCGGGCAGCAGCAGGAGGCAGAGCTCCAAGACAACTGAAGATGATCCATCAAGTGCTTCAAGAGAAGCTACTGTTAGCAAGCAGAAGTCAGATATTCAATATATGCCTCGAAAGTCAACATCCCCCGCATACCTGCACAAAGAAGTAAATAGCAATCCCAGCCATCAAAGGGATATATCATCAAAGTTTGATGGTCTCAGCTTGAATTCAAAGCTGTCAAATAGTCCACTTAGAGATGATGGTGCCACATCTGTTTCATGTGATGATCTAGTTGGAAACATGATGTTTAGATGTGTAGATTCCAGAAAGTTATTTGATATCTGGGCACGTTGCATTGGGAGGTGTCACTCGAAGACTTTGAGGCAGCTTTTATACAACCATGGAAAGCTTGTGTCCATATGTGAAGTTGAAGGTGTTCTGGTTGCATATGTTGCATTTGGGGATGCAGATATTAAACTTAGGGGGGAAAGGTTTCTAAGCAGTATTACAAACTCCATGGAAATGGTTCTTAGACGTAACGTGGAGGTCAGAATTATCCACCTGCCAGATGGTGAGGGTGAAAGTCAGTTAAATCTACCAGGACTAAAGCAAGCAGAATCTATAATGGCTAGTGAAAAGGAACAAAGAGGAGGTCATATGAACGGAACAGAAGCTTATTCTAATTTCCCTCCAGTGCTTGATCGGAATTTTCCATCAACCACTGATTCATCCGATGCACTGGTTGAAGGCAATGGTGTGAGAGAGAAGAAGCAGGATCTTCCAATGCAGAGAATTGAATCCATTATCCGTGAGCAGAGGCTGGAAACAGCTTGGTTACAAGCTGTAGAGAAAGGTTCTCCAGGATCATTGAGTCATTTGAGGCCAGAGAGGAATCAAGTCCTGCCTCAGGAGTCTATGGACTCAACAAGGTTTTCCTCTCAGCATTGGGAAGATGAGCTCAATCATGAACTCAAagttttgaaagttaaaaatggTAGGGTCCTACAGAAGGATCAGGATGGTAGAAGGGCTGATCGTTATCCCATGTCTCCAAGTTTATTGCATGATAGCAGTTTAGCAACCAATCCGATAAAAGATAATCTGGGATATGAATCAGGTACAGGACGTGGGGGATGTAGTGGATTTTTGTGTTGGAAAAACTCTAAGCGTAGAAGGGTACAGGTAAAAGGCACCCCTGTTAGAGCACGTAAAGTTGGACATTTTCCATTGTTTGGGGAGTGTGGTAAGTCAATGAAAAAGGAGACTGGAAGATA 3770 0.4125 MSEMRLSDPSKLHLKKELNQIRKAARVLRDPGTTSSWKSPLNSSRSVAAASASAWRSNLENDSKRFNGNSQHDSQFSLQNGNNNNNNGKEKRVFLYNWKNYKSSSEKSGRAKNNEDYEEEDDEEDAGGNDGSSSLLGSFEDSLSDARNGCDSKSDTYLGVGGTRSSIFRCRDANLVSLGTPRRGLGIKKKSKKTNTHLDILTKYQQRETNLARKVGNSKAFLEGHPSMPFSRDDSVEQSDDTEDYCNSEDLRRNSRASPLLLKLKHKNWSRNSSKFLRTSRKEDSSYSYGTPALSTSSYRYGHYNPSTVGSWDGTTTSVNDGDDEVDDHLDLPGRQGCGIPCYWSKRTPRHRGMCGSSYSPSLSDTLRRKGSSILCGSQTIYPRHRRSLSTSDKRRISSRSAQGVLPLLTNSGDVRGGSSLGTGQSDDELSTNFGELDLEGLSRLDGRRWSLSCRSQEGLEIVAFNGEGDEEGTPENTRSFSQKYKPMFFGELIGQNIVVQSLISAISRGRIAPVYLFQGPRGTGKTSTARIFAAALNCLAPDDSKPCGYCRECTDFVSNKSRDLLEVDGTNKKGIDRVRYILKKLSVGSSSASSRYMVFVIDECHLLPSKTWLALLKFLEEPLQRVVFIFITTDPDNVPRTIQSRCQKYLFNKIKDGDIVARLRKISAEENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRSRELMDSGVDPMILMSQLASLIMDIIAGSYTVVDAKPGDSFFGGRSLNESELERLKQALKLLSDAEKQLRTSSERSTWFTATLLQLGSVPSTDLTQSGSSRRQSSKTTEDDPSSASREATVSKQKSDIQYMPRKSTSPAYLHKEVNSNPSHQRDISSKFDGLSLNSKLSNSPLRDDGATSVSCDDLVGNMMFRCVDSRKLFDIWARCIGRCHSKTLRQLLYNHGKLVSICEVEGVLVAYVAFGDADIKLRGERFLSSITNSMEMVLRRNVEVRIIHLPDGEGESQLNLPGLKQAESIMASEKEQRGGHMNGTEAYSNFPPVLDRNFPSTTDSSDALVEGNGVREKKQDLPMQRIESIIREQRLETAWLQAVEKGSPGSLSHLRPERNQVLPQESMDSTRFSSQHWEDELNHELKVLKVKNGRVLQKDQDGRRADRYPMSPSLLHDSSLATNPIKDNLGYESGTGRGGCSGFLCWKNSKRRRVQVKGTPVRARKVGHFPLFGECGKSMKKETGR 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00688 1256 MobiDBLite consensus disorder prediction 857 876 - -
Bva13g00688 1256 Pfam DNA polymerase III subunits gamma and tau domain III 709 774 IPR022754 GO:0003887
Bva13g00688 1256 MobiDBLite consensus disorder prediction 833 899 - -
Bva13g00688 1256 Gene3D - 657 718 - -
Bva13g00688 1256 MobiDBLite consensus disorder prediction 1169 1190 - -
Bva13g00688 1256 CDD AAA 494 652 - -
Bva13g00688 1256 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 480 829 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Bva13g00688 1256 Coils Coil 791 818 - -
Bva13g00688 1256 MobiDBLite consensus disorder prediction 104 138 - -
Bva13g00688 1256 MobiDBLite consensus disorder prediction 883 899 - -
Bva13g00688 1256 MobiDBLite consensus disorder prediction 222 250 - -
Bva13g00688 1256 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 207 1195 - -
Bva13g00688 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 702 IPR027417 -
Bva13g00688 1256 SMART AAA_5 512 674 IPR003593 -
Bva13g00688 1256 Gene3D - 472 653 IPR027417 -
Bva13g00688 1256 MobiDBLite consensus disorder prediction 408 432 - -
Bva13g00688 1256 Pfam DNA polymerase III, delta subunit 495 655 - -
Bva13g00688 1256 PANTHER PROTEIN STICHEL-LIKE 1 207 1195 - -
Bva13g00688 1256 MobiDBLite consensus disorder prediction 61 89 - -
Bva13g00688 1256 CDD HLD_clamp_pol_III_gamma_tau 655 718 IPR045085 -
Bva13g00688 1256 SUPERFAMILY post-AAA+ oligomerization domain-like 726 827 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00688 Bva-Chr13 3185305 3191082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00688 476 770 Core DNA Replication Machinery Family AT1G21690 25.329 4.66e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00688 - - gmx:100814391 1816.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00688 13 3185305 3191082 Bva13g00688 13 3185305 3191082 ECH