Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00687 ATGGAACACCCAATACCTCGCACAGTGGAAGAGGTTTTCAGCGACTTTAAGGGTAGACGAGCTGGATTGATAAAGGCCCTCACTTCTGATGTTCAAAAGTTCTACCAACTGTGCGATCCTGAGAAGGAGAACTTGTGTCTATATGGATTTCCAAATGAAACTTGGGAAGTTAATTTGCCAGTTGAAGAAGTGCCTCCTGAACTGCCTGAGCCAGCACTAGGCATTAATTTTGCTAGGGATGGGATGCAAGAGAAGGACTGGTTATCTCTGGTTGCAGTTCATAGTGACTCATGGCTTCTTGCTGTTGCTTTCTATTTTGGTGCTCGTTTTGGGTTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTCTCAACCATATTTGAAGTTGTGACCGGAAGTGCTAAACAGCCAAAGGATCAATCTCACAACAATGGTAGCAAAAGCAAATCAAGTGGGAAGGCCCGCCAATCTGATTCTCAGGCTAAGGGTGTGAAGATGTCCCCACAACCCAAAGAGGAGGAAGAGagtggagaagaagaagaggaagatgagGAACAAGGTGCGACATGTGGGGCCTGTGGCGATAATTATGCTACTGATGAATTCTGGATCTGTTGTGATGTGTGTGAGAGATGGTTCCATGgaaaatgtgtaaaaatcACTCCTGCTAAGGCCGAGCACATCAAGCAATACAAGTGCCCAAGCTGCAGTAACAAGAAGGCTAGAGTTTA 743 0.424 MEHPIPRTVEEVFSDFKGRRAGLIKALTSDVQKFYQLCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLSTIFEVVTGSAKQPKDQSHNNGSKSKSSGKARQSDSQAKGVKMSPQPKEEEESGEEEEEDEEQGATCGACGDNYATDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKKARV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00687 247 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED 1 247 - -
Bva13g00687 247 CDD PHD_AL_plant 194 243 IPR044104 -
Bva13g00687 247 MobiDBLite consensus disorder prediction 138 168 - -
Bva13g00687 247 MobiDBLite consensus disorder prediction 138 193 - -
Bva13g00687 247 Pfam Alfin 8 136 IPR021998 GO:0006355|GO:0042393
Bva13g00687 247 MobiDBLite consensus disorder prediction 177 192 - -
Bva13g00687 247 SUPERFAMILY FYVE/PHD zinc finger 182 244 IPR011011 -
Bva13g00687 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 246 IPR013083 -
Bva13g00687 247 Pfam PHD-finger 194 243 IPR019787 -
Bva13g00687 247 ProSiteProfiles Zinc finger PHD-type profile. 191 243 IPR019787 -
Bva13g00687 247 SMART PHD_3 193 241 IPR001965 -
Bva13g00687 247 ProSitePatterns Zinc finger PHD-type signature. 194 240 IPR019786 -
Bva13g00687 247 PANTHER CPG BINDING PROTEIN 1 247 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00687 Bva-Chr13 3175747 3180107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00687 1 244 Alfin-like Transcription Factor Family AT1G14510 80.488 1.33e-129 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bva13g00687 Alfin 2.1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00687 - - gmx:100807826 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00687 13 3175747 3180107 Bva13g00687 13 3175747 3180107 ECH