Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00684 ATGGCAATTGCAGCAAACTCATCGTCATCCACCATGACCCTAGGCCATAGCCATAGCCAAGACGATGCTGCCACCACCAACACCAACACCACCACCTCCGCCGCCACCAACAAGCCAGACGATGATCACGACCACGACGTGGTCATGCCGGGTTTTCGCTTCCATCCAACTGAAGAAGAGCTCGTTGAGTTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGCTTCAACGTTGAGCTTATCACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAACTTCCTGCCTTGGCAGCAATTGGTGAGAAGGAGTGGTACTTTTATGTGCCTAGAGATAGAAAGTATAGGAACGGGGATCGTCCGAACCGAGTGACCATGTCTGGTTACTGGAAGGCAACCGGAGCTGATAGAATGATAAAAACGGAAAATTTCCGGTCAATTGGGTTGAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCGAAGGGCATCCGAACCAGTTGGATTATGAACGAATATCGCTTGCCACACCATGAAACTGAGCGATATCAAAAGACTGAGATATCGCTTTGCCGCGTCTACAAGAGACCTGGGGTAGAAGACCATCCTTCACTTCCTCGCTGTCTCCCAATACGACCATCTTTGTCGAGAGCTTCATACTCAGACAAGAATAATAAGCACAATGGAATAATTCATCAGAACGTGGGATTCGTGGCGCAATCACCGCAAATTGAGCAAataattgacaaaataaacgaaGCTGAAGGAAGCAGCACTGCAGGTTCAGATGTCACCACAGCACTTGGACTCTCCCAGCACAATAACATTGTTTACAGTACTGCAATGGGTGCACTTAGCACAACAATGGGGCTACCGGCAGTCCAAATGGAGGATGAAGGGTTAATGCTTTTGCAGCAGCAATCAGCAAAGCAAGCACAAGCAGCAGCCTCCTCCTCATTAATTCCGGCCACCTTCTTCGGCCCGGCCGATGCGGCTTCTTCGGTGTCATCTGCTAATGCTACGGTGGAATATGATCTCAATAGGCTATTAAGTTATCAACAACAATACTACAATGTTCAAAGTGATCAGCAGCTCTCTAATTTGCCAATGCAATCACAGCCAGTGGCTTTCAACTCGATACCAAATTCGCTCCCAACCACTTTCCCCGACAGACTGTGGGAATGGAATCCAATCCCAGAGACAAACCGGGAGTACAGCAACATGTCCTTCAAGTA 1232 0.4765 MAIAANSSSSTMTLGHSHSQDDAATTNTNTTTSAATNKPDDDHDHDVVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTMSGYWKATGADRMIKTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETERYQKTEISLCRVYKRPGVEDHPSLPRCLPIRPSLSRASYSDKNNKHNGIIHQNVGFVAQSPQIEQIIDKINEAEGSSTAGSDVTTALGLSQHNNIVYSTAMGALSTTMGLPAVQMEDEGLMLLQQQSAKQAQAAASSSLIPATFFGPADAASSVSSANATVEYDLNRLLSYQQQYYNVQSDQQLSNLPMQSQPVAFNSIPNSLPTTFPDRLWEWNPIPETNREYSNMSFK 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00684 410 Pfam No apical meristem (NAM) protein 50 174 IPR003441 GO:0003677|GO:0006355
Bva13g00684 410 ProSiteProfiles NAC domain profile. 48 195 IPR003441 GO:0003677|GO:0006355
Bva13g00684 410 MobiDBLite consensus disorder prediction 1 36 - -
Bva13g00684 410 MobiDBLite consensus disorder prediction 1 47 - -
Bva13g00684 410 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 25 405 - -
Bva13g00684 410 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 25 405 - -
Bva13g00684 410 Gene3D NAC domain 57 198 IPR036093 GO:0003677|GO:0006355
Bva13g00684 410 SUPERFAMILY NAC domain 47 195 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00684 Bva-Chr13 3158388 3160758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00684 47 211 NAC Transcription Factor Family AT2G02450 90.303 6.97e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva13g00684 NAM 5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00684 - - gmx:100792622 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00684 13 3158388 3160758 Bva13g00684 13 3158388 3160758 ECH