Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00627 ATGGAACGTGGAGGCTTTCATGGTTACCGCAAGCTCCCCAACCCCAACACATCATCtgGATTGAAACTATCATCAGTAGCAGATCAGAAGAGCACGAGACAGCTACCAGAGAACAACAACAACATGGCAGCAACCGAGGACAGCGAGTGCACGGTGAGGGAGCAAGACCGTTTCATGCCAATAGCCAACGTGATCAGAATCATGCGCAAGATCCTTCCCCCTCATGCAAAAATCTCAGACGATGCGAAAGAAACAATCCAAGAATGCGTGTCGGAGTACATAAGCTTCATAACCGGGGAAGCCAACGAGCGGTGCCAGAGGGAGCAACGCAAGACCATAACAGCCGAGGATGTTTTATGGGCAATGAGCAAGCTGGGGTTCGACGACTACATTGAACCTCTGACTATGTACCTTCACAGGTACCGTGAGATGGATGGTGATCGTGCTTCGATGAGGGGTGAGCCTTTGGGGAAGAGAGCTGTGGAGTATGGTGCTGCTCTGGGTGTCAATGCTGCTGCTGCACCTGCTTTTGTGCCTCAGTATCATATTGCCCATCCAAATGGGTATTTTGGTGCAGCCATGGGAGGAGGAGGGTACATGAGGGATGGTGCAGGGTCTTCTCAAGCTGTGCCTCTCCATAATATCAATGCTGAACCtaataatcaatataaatg 674 0.497 MERGGFHGYRKLPNPNTSSGLKLSSVADQKSTRQLPENNNNMAATEDSECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMDGDRASMRGEPLGKRAVEYGAALGVNAAAAPAFVPQYHIAHPNGYFGAAMGGGGYMRDGAGSSQAVPLHNINAEPNNQYK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00627 224 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 164 - -
Bva13g00627 224 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bva13g00627 224 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Bva13g00627 224 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Bva13g00627 224 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Bva13g00627 224 SUPERFAMILY Histone-fold 55 153 IPR009072 GO:0046982
Bva13g00627 224 Gene3D Histone, subunit A 44 162 IPR009072 GO:0046982
Bva13g00627 224 MobiDBLite consensus disorder prediction 1 50 - -
Bva13g00627 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 122 IPR003958 -
Bva13g00627 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bva13g00627 224 MobiDBLite consensus disorder prediction 12 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00627 Bva-Chr13 2867721 2869570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00627 1 189 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.679 1.37e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bva13g00627 CBFD_NFYB_HMF 6.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00627 K08065 - tcc:18597346 289.656