Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00619 ATGGGTGATTCAGACAACGAGTCAGGAGGTCAACCCGGAAACACAAGCAGAAACCAGGAATTCTCACTTTGCAGAGAGCAAGACAGGTTCCTGCCCATAGCCAACGTTAGCAGGATCATGAAGAAAGCTTTACCAGCAAACGCCAAGATCTCAAAGGAAGCCAAGGAGACCGTACAAGAGTGCGTATCAGAGTTCATAAGCTTCATCACAGGGGAAGCCTCCGAGAAGTGccagaaagagaagaggaagacAATCAACGGTGATGATCTACTCTGGGCCATGACTACACTTGGCTTCGAAGACTATGTAGAGCCCTTGAAGATTTATCTGCACAAGTATAGGGAGATGGAAGGGGAGAAGACTGCTTTGATTGGAGGGAGGCAGCAGGGGAGTGATCACATGAGGGATGGCAATGGTGGGGGATTTGGCTATGGCCATACCCATGACCATGGAGTGCCATCATCCATCATGATGATGATGGGGCATCAAGCTCATGGCCCCATGTATGGATCTAGCAGTGGATCAGCACCTTCTGGAAGGACTAGGTA 548 0.4781 MGDSDNESGGQPGNTSRNQEFSLCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASEKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGEKTALIGGRQQGSDHMRDGNGGGFGYGHTHDHGVPSSIMMMMGHQAHGPMYGSSSGSAPSGRTR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00619 182 MobiDBLite consensus disorder prediction 163 182 - -
Bva13g00619 182 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bva13g00619 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Bva13g00619 182 MobiDBLite consensus disorder prediction 1 21 - -
Bva13g00619 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 166 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bva13g00619 182 SUPERFAMILY Histone-fold 27 133 IPR009072 GO:0046982
Bva13g00619 182 MobiDBLite consensus disorder prediction 168 182 - -
Bva13g00619 182 Gene3D Histone, subunit A 19 137 IPR009072 GO:0046982
Bva13g00619 182 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 166 - -
Bva13g00619 182 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Bva13g00619 182 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Bva13g00619 182 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00619 Bva-Chr13 2827477 2828453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00619 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.769 6.75e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bva13g00619 CBFD_NFYB_HMF 6.8e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00619 K08065 - gmx:100305641 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00619 13 2827477 2828453 Bva13g00619 13 2827477 2828453 ECH