Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00617 ATGGGGAATGTGAATGCTAGAGAAGATGAGAATAGTAATCCATCAGGGGCTGAAGAAAGCGGTGGCAGTTTGCAGGAGAACATGTCTGCAGCAGATGGAATTGGGAACGCTGGGTATCGTGCGCCTGGTGTGGCTTCTGAGTTGATAGGTCAATCTCCTCCGACAAGCCCTAGAGCCACTCAATCTCCACTGATGTTCACTCCTCAAGTCCCTGTGATTCCACTTCAAAGACCAGATGAGATGCACGTTCCATGTAATTCCTGGATGCAAACTACTTCAGGATGTGAAGATATGTGCAGAGAGCAAGGAATTCCGACTATCATTACTTGGAACTATGATGGCAAAGAAGTAGCCGTTGAGGGATCTTGGGATAATTGGAAAACAAGAATGCTCTTGCAGAGATCAGGGAAAGACTTTACAATCATGAAGGTACTACCATCTGGTGTATACCAGTACAGATTTCTCGTTGACGGACGCTGGAGGTACGCTCCTGACTTGCCTTGGGCCCAAGACGAAGCTGGCAACACTTACAACATTTTGGACTTGCAGGATTACGTTCCAGAAGACATTGGAAGTATTTCTAGCTTTGAACCTCCACAGTCGCCAGAATCTAGCTACAACAACTTGCAACTTGGGTCTGAAGATTATGCAAAGGAGCCACCGCTGTGTCCACCACACTTGCAGAAGACACTGCTTAATTTGCCTGCAAATAATATGGAAATCCCAGCTCCTTTATCAAGACCTCAACACGTAGTGCTCAATCATCTCTACATGCAGAAAGGAAAGAGCAGTCCTTCGGTGGTTGCATTAGGTACCACTCATCGCTTTTTGTCCAAATATGTCACTGTGGTGCTATACAAGTCTTTGCAGAGGTA 875 0.4606 MGNVNAREDENSNPSGAEESGGSLQENMSAADGIGNAGYRAPGVASELIGQSPPTSPRATQSPLMFTPQVPVIPLQRPDEMHVPCNSWMQTTSGCEDMCREQGIPTIITWNYDGKEVAVEGSWDNWKTRMLLQRSGKDFTIMKVLPSGVYQYRFLVDGRWRYAPDLPWAQDEAGNTYNILDLQDYVPEDIGSISSFEPPQSPESSYNNLQLGSEDYAKEPPLCPPHLQKTLLNLPANNMEIPAPLSRPQHVVLNHLYMQKGKSSPSVVALGTTHRFLSKYVTVVLYKSLQR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00617 291 Pfam Glycogen recognition site of AMP-activated protein kinase 104 183 IPR032640 -
Bva13g00617 291 Gene3D - 192 289 - -
Bva13g00617 291 MobiDBLite consensus disorder prediction 1 30 - -
Bva13g00617 291 CDD E_set_AMPKbeta_like_N 105 181 - -
Bva13g00617 291 SMART AMPKBI_2 199 289 IPR006828 GO:0005515
Bva13g00617 291 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 291 - -
Bva13g00617 291 SUPERFAMILY AMPKBI-like 186 288 IPR037256 -
Bva13g00617 291 SUPERFAMILY E set domains 102 183 IPR014756 -
Bva13g00617 291 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 291 IPR043554 -
Bva13g00617 291 Gene3D Immunoglobulins 97 186 IPR013783 -
Bva13g00617 291 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 217 287 IPR006828 GO:0005515
Bva13g00617 291 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00617 Bva-Chr13 2815826 2818534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00617 97 184 Protein tyrosine phosphatase (PTP) family AT3G01510 31.915 5.81e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00617 K07199 - jre:109018711 466.077