Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00587 ATGGGAATGGACCCTGGCAAGCTTTTCATTGGTGGGATTTCCTGGGATACAAATGAAGACCGACTCAGACagtattttcagaattttggAGATGTGGTTGAGGCTGTGATAATGAAGGATCGCACCACAGGGCGTGCCCGTGGTTTTggatttattgtttttgctgATCCTTCTGTTGCTGAACGTGTTGTGATGGAAAAACATGTCATTGATGGTAGAATTGTTGAAGCAAAAAAGGCTGTTCCTAGAGATGATCAGAACATTCTGAACAGAAGTAATGGCAGCAGCACTCATGGGTCGCCTGGACCTAGCCGCACAAAGAAGATATTTGTAGGAGGTCTAGCATCCACAGTCACCGAGAGCGACTTTAAGAagtattttgatcaatttggAGCAATCACAGATGTTGTTGTGATGTATGATCATAACACCCAAAGGCCAAGAGGTTTTGGATTCATCACCTATGATTCTGAGGATGCAGTAGAGAAAGTTCTGTGCAAAACTTTCCATGAACTGAATGGTAAAATGGTTGAGGTGAAGCGGGCTGTCCCAAAGGAATTATCTCCAGGTTCTAGTAGAGGGCAATTAGTTGGATATAACTAtggattaaataaaattaatagctTTTCTAATGGTTCTATTCAGGGATATAATCCAAGCCTGGTTGGTGGGCTTGGATTTGGGACAGATGGCAGATTTAGTCCTATTACTGTCGGACGGAGTGGATATCCTCCTTTTAGTCCTAGTTATGGAGCAGGGCTCAACTATGAACCTACGTTGAGTCAAAATGGGAATGCAAACTTCACTTCTACCCAGGCCTTTGGGCGGGCACTGAACCCTACATATACTGGAAGTTCAAGCAGGTATTCTAACGCCATTGGATATGCTGGTACAAGTGGAGGCAACAGTTTAACCATAAGTTCTCCAAGTCAGAGTTTTTGGGGTAATGGGAATCTTAACTATGCTCCTAACTCTGCAAACTCTAGTTCTTTTGTTGGGTATGGACGTGAAAATCCAAATATGGGTTCTTTTGATAGTATTGGAGCACTTTGGGGTTCCTTGCCTAGCATGGATCAAGCTGGATCAATTGGCTCCGGCTATGGTAAGGGTAGTCTTAGTTATGGCAGTGATGATGTGATTTTTGGTTCAAAATCTTTAGGTTATGGAAAAAGTAGTGAAAACCTTCTTGCATCATCTTCCCCCTATGCACTATCAAATGGAAATTCTGATGGGgcatataaagatatttatgaagCTGGATCATTTTTTGACCAAACTTGGAGATCACCACCTTCAGAACTAGAAGATTCTGGTTCCCTTGGTTGCTTTGGAAATGCTGTTTCTGATTTGGTGAGTAAAAATTCTGGTAGCCACATTGGGGCTTATACTGTTGCCAATAGACAAGCAAATAGAGgAATTGCTGCCTA 1427 0.4022 MGMDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFADPSVAERVVMEKHVIDGRIVEAKKAVPRDDQNILNRSNGSSTHGSPGPSRTKKIFVGGLASTVTESDFKKYFDQFGAITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLCKTFHELNGKMVEVKRAVPKELSPGSSRGQLVGYNYGLNKINSFSNGSIQGYNPSLVGGLGFGTDGRFSPITVGRSGYPPFSPSYGAGLNYEPTLSQNGNANFTSTQAFGRALNPTYTGSSSRYSNAIGYAGTSGGNSLTISSPSQSFWGNGNLNYAPNSANSSSFVGYGRENPNMGSFDSIGALWGSLPSMDQAGSIGSGYGKGSLSYGSDDVIFGSKSLGYGKSSENLLASSSPYALSNGNSDGAYKDIYEAGSFFDQTWRSPPSELEDSGSLGCFGNAVSDLVSKNSGSHIGAYTVANRQANRGIAA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00587 475 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Bva13g00587 475 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 475 - -
Bva13g00587 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Bva13g00587 475 MobiDBLite consensus disorder prediction 86 103 - -
Bva13g00587 475 CDD RRM2_DAZAP1 105 184 IPR034131 GO:0003723
Bva13g00587 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bva13g00587 475 Gene3D - 104 194 IPR012677 -
Bva13g00587 475 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Bva13g00587 475 SUPERFAMILY RNA-binding domain, RBD 106 194 IPR035979 GO:0003676
Bva13g00587 475 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bva13g00587 475 SMART rrm1_1 108 180 IPR000504 GO:0003723
Bva13g00587 475 MobiDBLite consensus disorder prediction 85 106 - -
Bva13g00587 475 Gene3D - 5 88 IPR012677 -
Bva13g00587 475 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bva13g00587 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 65 IPR000504 GO:0003723
Bva13g00587 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00587 Bva-Chr13 2664952 2669002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00587 8 219 Eukaryotic Initiation Factors Gene Family AT2G36660 27.602 2.14e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00587 K14411 - jre:108993403 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00587 13 2664952 2669002 Bva13g00587 13 2664952 2669002 ECH