Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00585 ATGGTTTCTCTGGGGGATTCTCACTCCAACTCCAACCGTTTCCCTTTAAGTCGAAGCTATTATACCACCACTTCTGCAAATTCTTCCCCCAAAATTCACCGATTTATCGGAAGGTCCATGCGAACCATTCGCTCCAATTTCTTTCAAGATGACCATAGCTGCTCCTTCACTGCACCCGCCACCGAAAAATCTGCATGCGTTTCTGAGAACTTGACCGATTCGGTCATCGACATGAGGCTCGGTGAACTCGCATCGAAGAACAGCAAAACTGCCAAGTCTTCTTCTACGGAGGAAGAGTTGCTTGATCTTTCTCAGGCTTTCAGTGACTTCTCGGCTTGTAGCAGCGATATTTCCGGGGAGTTACAGAGGCTGGCGACTTTGCCTTCGCCGGAAAATGTCCTGAATAACGAGAGTGGGGAGGTTCAGCAGGAGCCTGAGCCGGAGCTTGAGCCTTGCATGGGATTCCTGCAAAGGGAGAATTTTTCCACTGAGATTATTGAGAGTATTTCGCCGGAGGACCTTCAGCCAACAGTGAAGATCTGTATCGACGGGCTGCAGTCACCATCGGTGGCTGTGAAGCGATCCGCAGCGGCCAAGCTCAGGCTATTGGCGAAGAACCGGGCGGATAATCGAGCTCTGATTGGGGAGTCGGGTGCTGTCCCTGCTTTGGTTCCCCTGCTTCGTTGCAGTGATCCATGGACCCAGGAGCACGCCGTCACGGCCCTGCTGAATCTGTCACTTCACGCAGACAACAAGATGCTGATAACAAATGCAGGAGCTATAAAGTCACTGATTTATGTACTGAAAACTGGGACGGAGACTTCGAAGCAGAACGCGGCGTGTGCGCTGTTAAGCCTTGCGTTggtagaagaaaacaagagttCGATTGGGGCAAGCGGGGCAATACCACCTCTTGTTTCTTTGCTACTGAATGGTTCTAACAGGGGGAAGAAGGATGCACTGACGACACTGTACAAACTGTCTTCCATAAAGCCAAACAAGGAGAGGGCCGTCAGCGCTGGAGCAGTGAAGCCCCTTGTGGAGCTGGTGGCAGAGCAGGGGACGGGTATGGCTGAAAAGGCAATGGTTGTGCTGAATAGCTTAGCGGGGATTCAGGAAGGGAAGGATGCCATTGTGGAAGAAGGTGGAATAGCCTCTCTTGTGGAAGCAATTGAAGATGGGTCAGTGAAGGGGAAGGAATTTGCTGTTTTGACGCTTCTGCAGCTATGTTCTGACAACCTGAGGAATAGAGGGTTGCTTGTGAGGGAGGGGGGAATACCTCCTTTGGTTGCACTTTCCCAGACTGGAAGTGCCAGAGCTAAGCACAAGGCTGAAATGCTTCTTACATATTTGAGAGAATCAAGACAAGAAGCATCCTCTTCAAGCCCTTA 1391 0.5032 MVSLGDSHSNSNRFPLSRSYYTTTSANSSPKIHRFIGRSMRTIRSNFFQDDHSCSFTAPATEKSACVSENLTDSVIDMRLGELASKNSKTAKSSSTEEELLDLSQAFSDFSACSSDISGELQRLATLPSPENVLNNESGEVQQEPEPELEPCMGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSPSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLHADNKMLITNAGAIKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLSSIKPNKERAVSAGAVKPLVELVAEQGTGMAEKAMVVLNSLAGIQEGKDAIVEEGGIASLVEAIEDGSVKGKEFAVLTLLQLCSDNLRNRGLLVREGGIPPLVALSQTGSARAKHKAEMLLTYLRESRQEASSSSP 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00585 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 218 260 IPR000225 GO:0005515
Bva13g00585 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515
Bva13g00585 463 Pfam Armadillo/beta-catenin-like repeat 209 246 IPR000225 GO:0005515
Bva13g00585 463 Pfam Armadillo/beta-catenin-like repeat 291 328 IPR000225 GO:0005515
Bva13g00585 463 SMART arm_5 248 288 IPR000225 GO:0005515
Bva13g00585 463 SMART arm_5 330 370 IPR000225 GO:0005515
Bva13g00585 463 SMART arm_5 412 453 IPR000225 GO:0005515
Bva13g00585 463 SMART arm_5 207 247 IPR000225 GO:0005515
Bva13g00585 463 SMART arm_5 371 411 IPR000225 GO:0005515
Bva13g00585 463 SMART arm_5 289 329 IPR000225 GO:0005515
Bva13g00585 463 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 459 - -
Bva13g00585 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 300 342 IPR000225 GO:0005515
Bva13g00585 463 Gene3D - 162 461 IPR011989 -
Bva13g00585 463 PANTHER U BOX DOMAIN-CONTAINING 6 459 - -
Bva13g00585 463 SUPERFAMILY ARM repeat 172 452 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00585 Bva-Chr13 2655071 2657430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00585 155 456 U-box Gene Family AT2G23140 48.387 1.37e-82 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00585 - - zju:107435190 706.827