Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00562 ATGGCGGGCTCATGTTTCTCTGCACTTCGCCTAAGGAGGTCAAAGAGTAGGCCTATATCAATTCCTTCTTCGTCAAAAACCTATTTGGATTCTGACATGGAGAACTTGGAAAGGAAGAGATTTGACAGCTTGGAGTCATGGTCAATGATTCTGGACTCTCAGAATGTGGAGACATGGGAACCTTCAAAAGAGGATCAGGCGGAGGAGTGGCATGCTGACCTTTCGCAGCTTTTTATTGGAAACAAGTTTGCCTCTGGAGCTCATAGTCGAATTTACCGTGGAATATACAAGCAGAGAGCTGTTGCTGTGAAAATGGTGAGGATTCCAGCTCAGAATGAGGAGAGAAGATCCATATTAGAACAGCAATTTAAATCTGAAGTTGCTTTACTGTCACGTCTCGTTCACCCTAACATAGTTCAGTTTATTGCAGCTTGTAAAAAACCGCCCGTGTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAGAAAGAACCTTATTCTCTTTCGATAGAAACCATATTAAGGTTAGCTCTTGATATATCTCGGGGTATGGAGTACCTTCATTCACAAGGTGTGATTCACAGAGatctaaaatcaaataacttgCTTCTGAACGACGAGATGAGGGTTAAGGTGGCAGATTTTGGTACTTCGTGTCTCGAAACAAGGTGCCGAGAAACCAAAGGAAACATGGGCACATATCGTTGGATGGCACCGGAGATGATTAAGGAAAAACCTTATACTAGAAAAGTTGATGTGTATAGTTTTGGAATTGTTCTTTGGGAACTGACAACAGCTCTTCTTCCCTTCCAAGGAATGACTCCAGTGCAGGCTGCTTTTGCTGTGGCTGAGAAGAATGAGAGGCCACCACTGCCTGCTAGTTGTCAACCGGCACTTGCACATCTGATAAAGCGCTGCTGGTCAGCAAACCCATCTAAGCGACCAGATTTCTGCGACATCGTATCAGCATTGGAGAAGTACGACGAGTGTGTGAAAGAGGGCCTCCCTCTGACTTCTCATTCGGGACTTGTCAGCCGAAATGCCATTATTCAACGCTTGAAAGGCTGCGTCCCCATGAATTCCTCCTCTATACCTGTACATGCCTG 1127 0.441 MAGSCFSALRLRRSKSRPISIPSSSKTYLDSDMENLERKRFDSLESWSMILDSQNVETWEPSKEDQAEEWHADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPAQNEERRSILEQQFKSEVALLSRLVHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFCDIVSALEKYDECVKEGLPLTSHSGLVSRNAIIQRLKGCVPMNSSSIPVHA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00562 375 Gene3D Phosphorylase Kinase; domain 1 66 159 - -
Bva13g00562 375 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 362 - -
Bva13g00562 375 ProSiteProfiles Protein kinase domain profile. 77 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g00562 375 Pfam Protein tyrosine and serine/threonine kinase 79 331 IPR001245 GO:0004672|GO:0006468
Bva13g00562 375 PRINTS Tyrosine kinase catalytic domain signature 155 168 IPR001245 GO:0004672|GO:0006468
Bva13g00562 375 PRINTS Tyrosine kinase catalytic domain signature 239 249 IPR001245 GO:0004672|GO:0006468
Bva13g00562 375 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672|GO:0006468
Bva13g00562 375 PRINTS Tyrosine kinase catalytic domain signature 193 211 IPR001245 GO:0004672|GO:0006468
Bva13g00562 375 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672|GO:0006468
Bva13g00562 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Bva13g00562 375 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 362 - -
Bva13g00562 375 SMART serkin_6 77 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g00562 375 CDD STKc_MAP3K-like 84 331 - -
Bva13g00562 375 Gene3D Transferase(Phosphotransferase) domain 1 160 349 - -
Bva13g00562 375 SUPERFAMILY Protein kinase-like (PK-like) 53 331 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00562 Bva-Chr13 2563095 2565671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00562 1 364 MAP Kinase Kinase Kinase AT1G62400 82.133 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Bva13g00562 PK_Tyr_Ser-Thr 3.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00562 - - gmx:100799437 670.618