Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00556 ATGAACAGAGGCCTTTCAATCAGAAAAGagCCAAAGCCAAGTCCTTCACGGAAACTAGATATTCCCATATGTTTAAAGGATTCTATTCTTCTATCTTCTTCCGGAGTTCGGTTCTGGAGCTCTAACAGGACAATCACGAATTTTCCTGAAAGAATAGACCTTTCAGCTTATCACttgGATTCTGTGGCTGTGTATCTGAGTGAGCGAAAGAGGGAATATAATCATATGGGAAAATCTgggggaagaaaaaagaagggtgGTTCAAATCAAGTTGCTGTTGATAATTCAGTTCCAGTTGCTAACGGAGGTGTGGACTTAGACTCTccactatttttaaaaagagccCATGAGCTCAAAGAAGAAGGGAATAGGATATTTCAGAATAAGGACTATGCAGGTGCCCTTGAACAATATGACAATGCTcttcgactaactccaaagagCCACCCTGATAGGGCGGTTTTTCACAGCAATAGAGCAGCATGTTTGATGCAAATGAAGCCCATAGAATATGAAACCGTAATTGCTGAGTGCACCATGGCACTTCATGTCCAGCCCCGATTTGTGCGGGCTCTTCTTAGGAGGGCTCGGGCATTTGAGGCTATAGGGAAATATGAACTGGCTATGCAGGATGTACAAGTCTTATTGGGAGCTGACTCTAATCACCGGGATGCGTTGGAGATTGCCCAAAGATTGAGGACAGCATTGGGACCTCGTCAGGAGGCCCAGCAGGATCTTCAGAGTCGCCCCTCTCCTGCTGCACTTGGTGCTTCTGCAGTTCGTGGTGCCCCTGTTGCTGGTTTAGGGCCTTGTTTACCAGCCCGTCCAGTACCAAAGAAGGCAGCAAATTCAGCTGTTGGATCAGTTGTAAACCCACTTAACAATAAGCCAGAGCAATCCCAATCAGTTTTACCCACTCAAAATGGTCATGAGACTAAGACCCAGTATCCAAAACTTGTGTTGAAGTTATCAAATGGTTCTGCAAAATCATCTtactcaaaagaagaaaaccagaATGAGCATTCTTCTCATTCAACTATTCATGAACAGCTTTCAGAGGTTGCTGTTCAGTGGAGACCATTGAAGCTTGTGTATGATCATGACATTAGGCTCAGCCAGATGCCAATCAATTGCAGTTTCAGAGTACTAAGAGACATAGTAGGTAAAAGATTTCCATCGTCAAAGTCAGTTCTGGTCAAGTACAAGGATCTTGATGGAGATCTGGTCACTATAACCTCCACTGATGAACTCAGGTTGGCAGAGTCTAGTGTTGATAGCCATCTTATAAAAGAACCTGAAGCTGACAAAAGTGATTCAGTTGGGATGTTGAGACTACATATTGTTGAAGTTAGTCCTGAGCAGGAGCCACCTTTgttggaagaagaagaaaaacctgTTAAGACTGAAGGGATCAAGGGAGATGAGAGTGGGTCTCATTCTTCTGTCAGTGAATCTGTCTTAGAAACTCCTGATGCTGAAGTTGCTAAGGTTGGGAAAGAAACTCCAAAGGAAAAACCAGGAGCTGCAGAAGAAGCTGAATGCAAGGAAGTGGAGATGGATGACTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGATCCAGATGCTCACATTGATTTGCATGAGCTTGGCATGGAGCTTTGTTCAGAGGCACTTGAGGAAACAGTGACTAGTGAAGAGGCTCAAGGTCTATTTGACAAGGCTGCTTCAAAGTTCCAGGAGGTGGCTGCTTTGGCTTTCTTCAACTGGGGAAATGTTCATATGTGTGCAGCTAGGAAACGAATCCCCTTGGATGAGACAGCTGGGAAGGAGGTAGTGTCAGAACAGCTTCAAGTGGCTTATGACTGggtaaaggaaaaatattctttggCTAAACAGAAGTATGAGGAAGCACTTTTCATCAAACCAGACTTTTATGAGGGATTATTGGCTCTGGGACAGCAACAATTTGAAATGGCCAAACTTCATTGGTCATTTGCACTTGCTAAGAAGATTGATCTAGTAAGCTGGGATTCTGCAGAGACCCTCCAACTTTTTAACAGTGcagaagagaagatgaaagcTGCAACAGATATGTGGGAGAAGCTGGAGGAACAGAGAGCAAAAGAGCCAAAGGACTCAAATACaagcaagaaagaagaactattgagaagaagaaagaaacaagggGCTGCTAATGAGGGTGAGTCCTCCAGTGTCAGTGGTCTGGTTGAGATTTCTGCTGAGGAAGCTGCAGAGCAAGCGGCTGTCATGAGATCCCAGATTCATCTGTTCTGGGGTAATATGCTTTTTGAACGATCCCAAGTGGAATGCAAATTAGGGATGGATGGTTGGAGAAAAAACCTGGATGATGCTGTGGAGCGTTTTAAGCTTGCTGGAGTTTCTGAGGCTGACATTGCAATGGTTATAAAGAACCATTGTTCCAACGGAGATGCAAAGGAAAGAGATGAGAAAAAGATTCAGAACATACAGCCCAATTA 2492 0.4089 MNRGLSIRKEPKPSPSRKLDIPICLKDSILLSSSGVRFWSSNRTITNFPERIDLSAYHLDSVAVYLSERKREYNHMGKSGGRKKKGGSNQVAVDNSVPVANGGVDLDSPLFLKRAHELKEEGNRIFQNKDYAGALEQYDNALRLTPKSHPDRAVFHSNRAACLMQMKPIEYETVIAECTMALHVQPRFVRALLRRARAFEAIGKYELAMQDVQVLLGADSNHRDALEIAQRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPVAGLGPCLPARPVPKKAANSAVGSVVNPLNNKPEQSQSVLPTQNGHETKTQYPKLVLKLSNGSAKSSYSKEENQNEHSSHSTIHEQLSEVAVQWRPLKLVYDHDIRLSQMPINCSFRVLRDIVGKRFPSSKSVLVKYKDLDGDLVTITSTDELRLAESSVDSHLIKEPEADKSDSVGMLRLHIVEVSPEQEPPLLEEEEKPVKTEGIKGDESGSHSSVSESVLETPDAEVAKVGKETPKEKPGAAEEAECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQGLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDETAGKEVVSEQLQVAYDWVKEKYSLAKQKYEEALFIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLVSWDSAETLQLFNSAEEKMKAATDMWEKLEEQRAKEPKDSNTSKKEELLRRRKKQGAANEGESSSVSGLVEISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMDGWRKNLDDAVERFKLAGVSEADIAMVIKNHCSNGDAKERDEKKIQNIQPN 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00556 830 MobiDBLite consensus disorder prediction 493 513 - -
Bva13g00556 830 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Bva13g00556 830 ProSiteProfiles PB1 domain profile. 358 450 IPR000270 GO:0005515
Bva13g00556 830 Pfam PB1 domain 358 449 IPR000270 GO:0005515
Bva13g00556 830 PANTHER - 76 826 - -
Bva13g00556 830 MobiDBLite consensus disorder prediction 701 737 - -
Bva13g00556 830 SUPERFAMILY TPR-like 563 659 IPR011990 GO:0005515
Bva13g00556 830 SUPERFAMILY CAD & PB1 domains 357 426 - -
Bva13g00556 830 SUPERFAMILY TPR-like 113 246 IPR011990 GO:0005515
Bva13g00556 830 MobiDBLite consensus disorder prediction 283 312 - -
Bva13g00556 830 Gene3D Tetratricopeptide repeat domain 112 242 IPR011990 GO:0005515
Bva13g00556 830 MobiDBLite consensus disorder prediction 701 729 - -
Bva13g00556 830 CDD PB1 361 430 - -
Bva13g00556 830 MobiDBLite consensus disorder prediction 451 513 - -
Bva13g00556 830 PANTHER PROTEIN CLMP1 76 826 IPR044517 -
Bva13g00556 830 SMART PB1_new 358 450 IPR000270 GO:0005515
Bva13g00556 830 Coils Coil 683 703 - -
Bva13g00556 830 MobiDBLite consensus disorder prediction 457 474 - -
Bva13g00556 830 MobiDBLite consensus disorder prediction 287 312 - -
Bva13g00556 830 Gene3D - 360 430 - -
Bva13g00556 830 SMART tpr_5 115 148 IPR019734 GO:0005515
Bva13g00556 830 SMART tpr_5 153 188 IPR019734 GO:0005515
Bva13g00556 830 SMART tpr_5 189 222 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00556 Bva-Chr13 2537957 2541079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00556 105 236 Calmodulin-binding Proteins AT3G25230 26.573 6.70e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00556 - - gmx:100786963 1137.87