Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva13g00554 | ATGAGGCAACTCGGTCTCATATTGCAGGAACCGCTTCGGAGAGAAGGTGAATCAAGAACAATCCTGGACTTGTTCGCGGAGCAAATGGAAAGTGGCGTCGATAGAGAGCCAAGGAGGAGGAGGACTCTGAAAGAACGGCTCCGATTGACCGGAATCGGATGCTGTGGGGCCACCTGTGGTTTCGGACCCGCCGCCATAAGCGTCGAGcatgaagaagaggaagaaggtCAACGACAAGAACAGCAACCGCTGCAGGAAGCGAATTCGGGTCTTGCCTCGAACTCGTCGGACCCTGAATGCGTGGTCCCCGCCTCCTCTTCTTCAAGTATGAATCTTGCGGCGGCGTTGGCCGCCGAGCGTCAACACCGGGGATCGCAGGAACCAGATGGAGGTACGGGTACGGTAGGACCCGCCATTAACGGTTCGGATGTCCGAAGTGGAGGCGCTGTGCCCGGGACGCCGTGGAGGGTGTCGTTGATGAGGCTACTGGAAGAAACAGACAGTGGAGATGTGGCTGCGGTAACGGACACGGAGAAAGGAGTGGCGCCGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCGTTCATCCCATGTGGGCACACTTTTTGCAGGGTGTGTTCGAGGGAGTTGTGGTTGAATCGAGGGTCTTGTCCCCTTTGCAATCGCTCAATCCTCGAGATCCTTGATATTTTCTG | 713 | 0.5526 | MRQLGLILQEPLRREGESRTILDLFAEQMESGVDREPRRRRTLKERLRLTGIGCCGATCGFGPAAISVEHEEEEEGQRQEQQPLQEANSGLASNSSDPECVVPASSSSSMNLAAALAAERQHRGSQEPDGGTGTVGPAINGSDVRSGGAVPGTPWRVSLMRLLEETDSGDVAAVTDTEKGVAPGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva13g00554 | 237 | ProSiteProfiles | Zinc finger RING-type profile. | 189 | 227 | IPR001841 | - | |
| Bva13g00554 | 237 | MobiDBLite | consensus disorder prediction | 69 | 147 | - | - | |
| Bva13g00554 | 237 | SUPERFAMILY | RING/U-box | 185 | 234 | - | - | |
| Bva13g00554 | 237 | Pfam | Zinc finger, C3HC4 type (RING finger) | 186 | 231 | - | - | |
| Bva13g00554 | 237 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 18 | 237 | - | - | |
| Bva13g00554 | 237 | MobiDBLite | consensus disorder prediction | 81 | 114 | - | - | |
| Bva13g00554 | 237 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 236 | IPR013083 | - | |
| Bva13g00554 | 237 | SMART | ring_2 | 189 | 226 | IPR001841 | - | |
| Bva13g00554 | 237 | CDD | RING-HC | 189 | 226 | - | - | |
| Bva13g00554 | 237 | PANTHER | OS01G0917900 PROTEIN | 18 | 237 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva13g00554 | Bva-Chr13 | 2524739 | 2525933 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva13g00554 | 21 | 237 | C3H Transcription Factor Family | AT4G22250 | 48.879 | 1.59e-55 | 175 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva13g00554 | - | - | pavi:110764558 | 251.521 |