Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00549 ATGGAGGGTAATAGTTCTAACGGCACTTGTTGTGTAATGGGTTTTGGAGAGAACAGTAGTGGGATATGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGTCATCATCCAATAAATCctaatctaaataataatcataatccTAATGCAGACACAAACAGTCTTTTCCTTCCTATGCCTTGCACTAACGATCGCGACTCAAGCCACAATAACACTGGCAGCTCCTCTCTCATGCTTGACAGTAACCACAACCCCAACACTGGGTTAGGGTGTTATTTCATGGAGAGCGACCACAACAACAACGATGGTAGTAGCAGTAGCTCTTCTTCTGTCAAGGCCAGGATCATGGCTCATCCTCAGTACCACCGTCTCTTGGCTGCCTACGTCAATTGTCAAAAgATTGGAGCTCCTCCTGAAGTGGTGGCGAAGATAGAAGAAGCATGTGCTTCTGCAGTGACAATGGCAGGTGATGCAGCTGGCTCGGCCAGTATAGGTGAAGATCCAGCCCTGGATCAGTTCATGGAGGCTTATTGCGAGATGCTGACCAAGTACGAGCAAGAGCTCTCAAAGCCTTTCAAGGAAGCCATGCTCTTCCTTCAAAAGATTGAGTGTCAGTTTAAAGCTCTCACAATTTCGTCTTCAGACATTGGAAGAGCTCGTAACGAAGGTGGTGGTAGGAATGGATCATCGGAAGAAGACATGGAACATAACATGATAGATCCTCAGGCTGAGGATCGTGAATTGAAAGGTCAGCTTCTGCGCAGGTACAGTGGATACTTAGGCAGTCTTAAGCAGGAATTcatgaagaagaggaaaaaaggaaagctGCCTAAAGAATCAAGGCAACAATTACTTGATTGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAGTCACAAAAGCTTGCTCTTGCAGAATCAACAGGTCTGGATCAGAAGCAAATAAACAACTGGTTTATCAACCAAAGGAAAAGGCACTGGAAGCCTTCTGAGGACATGCAGTTTGTGGTGATGGATGCCACCCATCCCCACTATTACATGGATAATGTTTTGGGCAATCCCTTTCCCATGGATTTCTCTCATGCAATGCtctg 1106 0.4367 MEGNSSNGTCCVMGFGENSSGICPMMMMPLVTSHHGGHHPINPNLNNNHNPNADTNSLFLPMPCTNDRDSSHNNTGSSSLMLDSNHNPNTGLGCYFMESDHNNNDGSSSSSSSVKARIMAHPQYHRLLAAYVNCQKIGAPPEVVAKIEEACASAVTMAGDAAGSASIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQKIECQFKALTISSSDIGRARNEGGGRNGSSEEDMEHNMIDPQAEDRELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKESRQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHYYMDNVLGNPFPMDFSHAML 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00549 368 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
Bva13g00549 368 Pfam KNOX1 domain 114 152 IPR005540 GO:0003677|GO:0005634
Bva13g00549 368 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Bva13g00549 368 Gene3D - 275 337 - -
Bva13g00549 368 SUPERFAMILY Homeodomain-like 272 347 IPR009057 -
Bva13g00549 368 SMART KNOX1_2 112 156 IPR005540 GO:0003677|GO:0005634
Bva13g00549 368 MobiDBLite consensus disorder prediction 220 239 - -
Bva13g00549 368 Pfam ELK domain 250 271 IPR005539 GO:0003677
Bva13g00549 368 SMART HOX_1 272 337 IPR001356 GO:0003677
Bva13g00549 368 PANTHER - 3 357 - -
Bva13g00549 368 ProSiteProfiles ELK domain profile. 250 270 IPR005539 GO:0003677
Bva13g00549 368 ProSitePatterns 'Homeobox' domain signature. 308 331 IPR017970 GO:0000981|GO:0006355
Bva13g00549 368 Pfam KNOX2 domain 166 213 IPR005541 GO:0003677|GO:0005634
Bva13g00549 368 SMART KNOX2_2 163 214 IPR005541 GO:0003677|GO:0005634
Bva13g00549 368 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 357 - -
Bva13g00549 368 SMART ELK_2 250 271 IPR005539 GO:0003677
Bva13g00549 368 CDD homeodomain 282 334 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00549 Bva-Chr13 2490287 2494842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00549 114 368 Homeobox Transcription Factor Family AT1G62360 78.244 1.72e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva13g00549 KNOX2 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00549 - - rcu:8277968 534.258