Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00546 ATGGCCGACAcccatttgattttttctctCCGAGTCACTGTGTTTTTGTCAATCGCTTTGATCATTGCTACTCCGCCTCTCGCTCTTGCCAACACTGACCCTTCTGATGTTCAAGCACTTCAGGTTCTGTACAACGCGTTGAATAGTCCATCTCAGCTTACTGGTTGGAAAATTGGTGGGGGCGATCCATGTGGAGAGTCTTGGAAAGGGATAACATGTGAAGGTTCAGCCGTTGTTTCCATTGAGCTAGCAGGTTTAGGACTCAATGGAACTCTGGGATACCTGCTTTCAGACCTTATGTCGTTGAGACAGCTTGACTTAAGTGACAACAATATCCATGACACAGTTCCCTACCAGTTACCGCCAAATCTTACAAGCCTGAATCTTGCAAGCAACAACCTAAGTGGAAATCTACCTTATTCCATTTCTGCCATGGCTTCCCTCAATTATTTGAATGTAAGCCATAATTCAATCTCCATGTCAGTTGGAGATATTTTTGCTAGTCTTGCTGATCTCGGTACCCTGGATATATCGTTTAATAACTTCTCTGGTGATCTCCCTAGTTCATTTGGTTCATTGTCCAATCTTTCTTCTCTCTTCTTGCAGAACAATCAATTGACTGGTTCTCTTAATGCCCTTGTTGGTTTGCCCTTGAACACTTTAAATGTTGCAAACAACAATTTCAGTGGATGGATACCTCACGAACTTAGTTCAATCCATAATTTCATATATGATGGAAACTCTTTTGACAATGGTCCTGCTCCTCCTCTGCCACCATATACACCGCCTCCACTCAGCAGATCTCATAATAAAAGTCATCATTCTGGATTTGGCTCACATGATGAAACACAAGGTTCTGATAGTGAAAATTCTTATGCCAAAAAGGGTTTGACTGTTTGGGCTATCATAGGCATTGTATTGGGTTCGGTGTTTCTGGTTGCTATTATTCTACTTGCTCTAGTTTTCTGTGTCCGAAAGcacaagaagaaggaaaatggtGCAAGGGCTTCCAGGACAAATCTTCCTATTGCAACTAATAACGTAACTCCTCAGATGCAGGAGCAGAGGGTGAAAAGTTCTGCTGTTATTGCAGATCTGAAGCCCCCTCCAGCAGAAAAAGTAATGGTTGAGATGGTACCTACAAAAAATGGATCTGTAAAGCGGATGAAGTCCCCTATAACTGCCACATCATACACAGTTGCTTCTCTCCAAAGTGCAACAAATAGCTTTAgtcaagaatttattattggtGAAGGTTCTCTTGGTCGAGTATATAAGGCTGAATTCCCAAATGGGAAGaTTATGGCCATTAAGAAGATTGACAATGCAGCACTATCATTACAAGAAGAAGACAACTTTGTTGAAGCTGTTTCAAACATGTCACGCTTGAGGCATCCGAACATTGTTGTGCTGGTTGGATACTGTGTAGAGCATGGGCAGCGTCTTCTAGTTTATGAGTATATAGGAAATGGAAATCTACATGATATGCTCCACTTTGTTGAAGATAGCAGTAAGGTTTTATCTTGGAATGCACGTGTACGGATAGCACTTGGCACTGCTCGAGCCTTAGAGTATTTGCATGAAGTATGCTTGCCTTCTGTTGTGCATAGAAACTTAAAATCTGCAAACATATTACTCGATGAAGAGCTCAATCCTCACCTGTCTGACTGTGGCTTAGCTGCTCTAACACCAAACACTGAGCGGCAGGTTTCAACTCAGATGGTTGGTTCTTTTGGTTATAGTGCTCCCGAGTTTGCATTATCAGGAGTGTACACTGTGAAAAGTGATGTTTATAGCTTTGGGGTGGTCATGTTGGAGCTGTTGACTGGTCGTAAGCCACTTGACAGttCACGACCCAAATCAGAACAGTCACTTGTTAGGTGGGCCACTCCTCAGCTGCATGATATAGATGCCTTGGCCAAAATGGTTGATCCTGCTTTGAACGGCATGTATCCTGCAAAGTCACTGTCCCGCTTAGCTGATATAATTGCACTCTGTGTTCAGCCGGAACCTGAATTTCGACCTCCCATGTCTGAGGTAGTCCAAGCGCTAGTGCGGCTGGTGCAAAGAGCAAGCGTCGCGAAAAGGCGTTCCAGTGATGAATCTGGTTTTGGTCAGAAGACCCCGGATCATGAGGCAATAGACATGTCCTTTTA 2156 0.4235 MADTHLIFSLRVTVFLSIALIIATPPLALANTDPSDVQALQVLYNALNSPSQLTGWKIGGGDPCGESWKGITCEGSAVVSIELAGLGLNGTLGYLLSDLMSLRQLDLSDNNIHDTVPYQLPPNLTSLNLASNNLSGNLPYSISAMASLNYLNVSHNSISMSVGDIFASLADLGTLDISFNNFSGDLPSSFGSLSNLSSLFLQNNQLTGSLNALVGLPLNTLNVANNNFSGWIPHELSSIHNFIYDGNSFDNGPAPPLPPYTPPPLSRSHNKSHHSGFGSHDETQGSDSENSYAKKGLTVWAIIGIVLGSVFLVAIILLALVFCVRKHKKKENGARASRTNLPIATNNVTPQMQEQRVKSSAVIADLKPPPAEKVMVEMVPTKNGSVKRMKSPITATSYTVASLQSATNSFSQEFIIGEGSLGRVYKAEFPNGKIMAIKKIDNAALSLQEEDNFVEAVSNMSRLRHPNIVVLVGYCVEHGQRLLVYEYIGNGNLHDMLHFVEDSSKVLSWNARVRIALGTARALEYLHEVCLPSVVHRNLKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRPKSEQSLVRWATPQLHDIDALAKMVDPALNGMYPAKSLSRLADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVAKRRSSDESGFGQKTPDHEAIDMSF 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00546 718 ProSiteProfiles Leucine-rich repeat profile. 101 122 IPR001611 GO:0005515
Bva13g00546 718 CDD STKc_IRAK 416 687 - -
Bva13g00546 718 Pfam Protein kinase domain 413 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g00546 718 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Bva13g00546 718 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 30 714 - -
Bva13g00546 718 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Bva13g00546 718 PANTHER OS01G0253100 PROTEIN 30 714 IPR045271 GO:0004714|GO:0006468
Bva13g00546 718 MobiDBLite consensus disorder prediction 253 290 - -
Bva13g00546 718 Gene3D Ribonuclease Inhibitor 33 270 IPR032675 -
Bva13g00546 718 MobiDBLite consensus disorder prediction 696 718 - -
Bva13g00546 718 SUPERFAMILY L domain-like 32 241 - -
Bva13g00546 718 Gene3D Transferase(Phosphotransferase) domain 1 488 710 - -
Bva13g00546 718 Gene3D Phosphorylase Kinase; domain 1 372 487 - -
Bva13g00546 718 ProSiteProfiles Protein kinase domain profile. 410 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g00546 718 SUPERFAMILY Protein kinase-like (PK-like) 386 684 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00546 Bva-Chr13 2469982 2475055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00546 145 718 Strubbelig Receptor Gene Family AT4G22130 72.174 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Bva13g00546 Pkinase 3.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00546 - - aprc:113869285 1112.44