Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00540 ATGGATATTTTAATTGCACGGCAAGAACGGAAAAACCAACACACTGACAGTAAGTTGGACAATATGTCCAGATACTCAAGAGCTATTGGAGTTTCAAAGAAGAGGAAACGCCAAGTAACTTGTGAACATGGAACTAAGGAATCAACGTCAGTGGTGGAAGAAAACATTTTGGGATGTCTAAAGAGGAGGAGAAACAAGAAAGGAGATGAACAACAAAACAATCTACTTGCCTCAAGTAAGagagattattattttgaagatgaCTTGTTGATCAATGAACTGGAAAATGACGAGGAAGCATGGATTTTCCAAAAGACGAGGTCCAGGAGCAGATCCTCAAGCAATACCAGTTTGAATTCTTCATCACCTGAGAGCAATGACTCTTCAAAAAGCATGGAGGCTACTAAACAAGATCGCTTAAAATGTCATCAGTGTATGAGAAAGGGAGGCATTATTGTTGTACCTTGCACTAATTGCGAACAGAAAATGTACTGTGTCAAATGCATCAAGAAATGgTATCCCAATGTgtcagaagaagaaatttcagAGAATTGCCCATTTTGCAGTAAAAACTGCAATTGCAATATTTGCTTGCGTTCAAGTGGGATGATCAAGACCTCTAACAGGGACATAACTGATCATGAAAAGATTCAGTATCTGCAATACTTGATTAAATTACTCCTTCCATTTCTGAAACAAATTTGTGAAGAACAAATTGAGGAGGAAAAACTTGAAGCTAATATACAAGGAAAATTATGCTCTGAGGTTGAGATATCACAAACTCTTTGTATTGACAATGAACGTGTCTATTGCAACCATTGTGCTACTTCGATTGTGGACCTTCATCAAAGCTGCCCCAAGTGTTCCTATGAACTATGCCTTAGTTGCTGTCATGAACTTCGTAGAGGAAGCATTTCACCCCAGAAAGAAGTGAAGTTTCAATACGTAAATAGGGGCCCAGATTATATGTTTGGTGGCGATCCCATTCCAGGATCTTGTAATTTAAAGGCTTCAGAGGGTTATGTTGAGTTATGTATGGAGTGGAAGGCCAACATTGATGGTAGTGTTACTTGTGCCCCAAAAGATGAGGGGGGTTGTGGCAATTGTGTGTTGGAGCTGAAGCGCATCCTTCCACAAGGATGGATATCTGACTTGGAAGCCAAAGCTCGTCATTTGTTAAGGAACAgtgaaatagaagaaataactCTTCAGCGGGAAGATGCTACATCAAGCTACAACTCTATGAGAAGGGCAGCTTCTAGAGAAAGCACTAAGGACAATAACATATACTGTCCAGCCTCAAAGGACATTTTAAATGAAGGGATATTGCTCTTCCAAAAGCATTGGACTAAAGGCGAACCAATTATAGTTCGTGATGTTCTAGAACAGGGAACAGGTTTGAGCTGGAAGCCAACGGTCATGTTGCGGGCATTATGTGAAAACTTGGATGTAGAAATCAGTTCAAAATTGTCAGAAGTGAAGGCCATTGATTGCCTAGCTAATTGTGAGGTGGACATTAATACTCATCAGTTCTTTGATGGTTATACAAATGGAAGAACATATGGTAACATCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGACAAATTTGAAGATCTTTTGCCCCGACATTGTGATGAGTTTATCCGTTGCTTGCCTTTTCAAGAATATACTGATCCTCGGGCTGGAATCCTCAATCTTGCTGTCAAGTTGCCACCCCATGTCCTGAAACCTGACTTGGGtccaaaaacatatattgCTTATGGGATTAAACAAGAACTCGGCAGAGGGGACTCTGTAACAAAGCTTCACTGTGATTTGTCTGATGCGGTGAATATTTTGACTGATACAGCAGAAGTAACACTAACTGATGAGCAGCATGTTATAATTTCAAAGTTGAAAGAAGCACAGAAGCTCCAAGATGAGAAAGAACTCTCTATTCAGGAAGGGGTTCCTGAATGTTTGAATGGACAATCATGTGAAGAGAATAAGGAACAAAAAGTAGATAAGGAAGCTTCAGAATTCACAGATAATTTGCCTGAGGGGATCGCCGATCCTGTAAAGTCAGAAGATactgaaaaggaaataaaaggaaatgaaaggaaaagaggtGCTGCTTTATGGGACATCTTTCGGAGAGAAGATACTGAGAAGTTAGAAGCATATCTAAGAAAACACCCCAAAGAATTTAGGCATACTTATTGTTCCCCAGTTGAAGAGGTTGTGCATCCAATTCACGatcaatgtttttatttaacttcagaccacaagaagaaattgaaggagGAATTTGGTGTAGAGCCATGGACATTTGAGCAGCAAGTTGGGGAAGCAGTATTTATCCCTGCTGGGTGCCCACACCAAGTCAGGAATCTCAAGTCATGTACAAAAGTTGCCGTGGACTTTGTGTCCCCCGAGAATGTCCGCGAGTGCCTGCGCTTAACTGAGCAGTTCCGTCAACTTCCTAAGAACCACAAGGCCAGGGAAGATAAACTTGAGATAAAGAAGATGATCGTTTATTCGGTTGACCAAACTGTTAAAGATTTACAAGCCTTGGTTACGTGTGGATTGAGAGCTTCAGCATTTTG 2597 0.3881 MDILIARQERKNQHTDSKLDNMSRYSRAIGVSKKRKRQVTCEHGTKESTSVVEENILGCLKRRRNKKGDEQQNNLLASSKRDYYFEDDLLINELENDEEAWIFQKTRSRSRSSSNTSLNSSSPESNDSSKSMEATKQDRLKCHQCMRKGGIIVVPCTNCEQKMYCVKCIKKWYPNVSEEEISENCPFCSKNCNCNICLRSSGMIKTSNRDITDHEKIQYLQYLIKLLLPFLKQICEEQIEEEKLEANIQGKLCSEVEISQTLCIDNERVYCNHCATSIVDLHQSCPKCSYELCLSCCHELRRGSISPQKEVKFQYVNRGPDYMFGGDPIPGSCNLKASEGYVELCMEWKANIDGSVTCAPKDEGGCGNCVLELKRILPQGWISDLEAKARHLLRNSEIEEITLQREDATSSYNSMRRAASRESTKDNNIYCPASKDILNEGILLFQKHWTKGEPIIVRDVLEQGTGLSWKPTVMLRALCENLDVEISSKLSEVKAIDCLANCEVDINTHQFFDGYTNGRTYGNIWPEMLKLKDWPPSDKFEDLLPRHCDEFIRCLPFQEYTDPRAGILNLAVKLPPHVLKPDLGPKTYIAYGIKQELGRGDSVTKLHCDLSDAVNILTDTAEVTLTDEQHVIISKLKEAQKLQDEKELSIQEGVPECLNGQSCEENKEQKVDKEASEFTDNLPEGIADPVKSEDTEKEIKGNERKRGAALWDIFRREDTEKLEAYLRKHPKEFRHTYCSPVEEVVHPIHDQCFYLTSDHKKKLKEEFGVEPWTFEQQVGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVRECLRLTEQFRQLPKNHKAREDKLEIKKMIVYSVDQTVKDLQALVTCGLRASAF 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00540 865 SUPERFAMILY Clavaminate synthase-like 444 852 - -
Bva13g00540 865 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 138 208 IPR018866 -
Bva13g00540 865 Gene3D Cupin 426 831 - -
Bva13g00540 865 SMART cupin_9 544 822 IPR003347 -
Bva13g00540 865 ProSiteProfiles Zinc finger RING-type profile. 142 189 IPR001841 -
Bva13g00540 865 MobiDBLite consensus disorder prediction 668 701 - -
Bva13g00540 865 CDD cupin_RmlC-like 746 806 - -
Bva13g00540 865 MobiDBLite consensus disorder prediction 111 130 - -
Bva13g00540 865 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 11 858 - -
Bva13g00540 865 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 858 IPR045109 GO:0032454|GO:0033169
Bva13g00540 865 ProSiteProfiles JmjC domain profile. 563 822 IPR003347 -
Bva13g00540 865 MobiDBLite consensus disorder prediction 111 133 - -
Bva13g00540 865 Pfam JmjC domain, hydroxylase 707 805 IPR003347 -
Bva13g00540 865 MobiDBLite consensus disorder prediction 687 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00540 Bva-Chr13 2435141 2440301 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva13g00540 JmjC 3.3e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00540 K15601 K21989 gmx:100797860 1061.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00540 13 2435141 2440301 Bva13g00540 13 2435141 2440301 ECH